Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01590 and HMPREF1058_RS01585 are separated by 325 nucleotides HMPREF1058_RS01585 and HMPREF1058_RS01580 are separated by 101 nucleotides HMPREF1058_RS01580 and HMPREF1058_RS01575 overlap by 38 nucleotides
HMPREF1058_RS01590: HMPREF1058_RS01590 - glucuronate isomerase, at 85,150 to 86,556
_RS01590
HMPREF1058_RS01585: HMPREF1058_RS01585 - tagaturonate reductase, at 86,882 to 88,321
_RS01585
HMPREF1058_RS01580: HMPREF1058_RS01580 - hypothetical protein, at 88,423 to 88,836
_RS01580
HMPREF1058_RS01575: HMPREF1058_RS01575 - precorrin-2 C(20)-methyltransferase, at 88,799 to 89,527
_RS01575
Position (kb) 86
87
88
89 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 85.937 kb on - strand, within HMPREF1058_RS01590 at 85.958 kb on + strand, within HMPREF1058_RS01590 at 85.958 kb on + strand, within HMPREF1058_RS01590 at 85.959 kb on - strand, within HMPREF1058_RS01590 at 85.959 kb on - strand, within HMPREF1058_RS01590 at 86.092 kb on - strand at 86.252 kb on + strand, within HMPREF1058_RS01590 at 86.253 kb on - strand, within HMPREF1058_RS01590 at 86.253 kb on - strand, within HMPREF1058_RS01590 at 86.271 kb on + strand, within HMPREF1058_RS01590 at 86.272 kb on - strand, within HMPREF1058_RS01590 at 86.273 kb on + strand, within HMPREF1058_RS01590 at 86.376 kb on + strand, within HMPREF1058_RS01590 at 86.377 kb on - strand, within HMPREF1058_RS01590 at 86.379 kb on - strand, within HMPREF1058_RS01590 at 86.469 kb on + strand at 86.869 kb on + strand at 86.871 kb on + strand at 86.987 kb on + strand at 86.988 kb on - strand at 86.988 kb on - strand at 86.988 kb on - strand at 87.094 kb on - strand, within HMPREF1058_RS01585 at 87.094 kb on - strand, within HMPREF1058_RS01585 at 87.229 kb on + strand, within HMPREF1058_RS01585 at 87.236 kb on - strand, within HMPREF1058_RS01585 at 87.437 kb on + strand, within HMPREF1058_RS01585 at 87.438 kb on - strand, within HMPREF1058_RS01585 at 87.500 kb on + strand, within HMPREF1058_RS01585 at 87.500 kb on + strand, within HMPREF1058_RS01585 at 87.501 kb on - strand, within HMPREF1058_RS01585 at 87.707 kb on + strand, within HMPREF1058_RS01585 at 87.767 kb on + strand, within HMPREF1058_RS01585 at 87.825 kb on - strand, within HMPREF1058_RS01585 at 87.832 kb on + strand, within HMPREF1058_RS01585 at 87.977 kb on + strand, within HMPREF1058_RS01585 at 87.977 kb on + strand, within HMPREF1058_RS01585 at 88.010 kb on + strand, within HMPREF1058_RS01585 at 88.077 kb on - strand, within HMPREF1058_RS01585 at 88.257 kb on + strand at 88.277 kb on - strand at 88.292 kb on - strand at 88.313 kb on - strand at 88.374 kb on + strand at 88.403 kb on - strand at 88.412 kb on - strand at 88.473 kb on + strand, within HMPREF1058_RS01580 at 88.473 kb on + strand, within HMPREF1058_RS01580 at 88.474 kb on - strand, within HMPREF1058_RS01580 at 88.497 kb on + strand, within HMPREF1058_RS01580 at 88.498 kb on - strand, within HMPREF1058_RS01580 at 88.526 kb on - strand, within HMPREF1058_RS01580 at 88.578 kb on - strand, within HMPREF1058_RS01580 at 88.588 kb on + strand, within HMPREF1058_RS01580 at 88.594 kb on - strand, within HMPREF1058_RS01580 at 88.620 kb on + strand, within HMPREF1058_RS01580 at 88.866 kb on - strand at 88.966 kb on - strand, within HMPREF1058_RS01575 at 88.966 kb on - strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 88.976 kb on + strand, within HMPREF1058_RS01575 at 89.031 kb on + strand, within HMPREF1058_RS01575 at 89.031 kb on + strand, within HMPREF1058_RS01575 at 89.032 kb on - strand, within HMPREF1058_RS01575 at 89.054 kb on - strand, within HMPREF1058_RS01575 at 89.103 kb on - strand, within HMPREF1058_RS01575 at 89.189 kb on + strand, within HMPREF1058_RS01575 at 89.190 kb on - strand, within HMPREF1058_RS01575 at 89.194 kb on - strand, within HMPREF1058_RS01575 at 89.194 kb on - strand, within HMPREF1058_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 85,937 - HMPREF1058_RS01590 0.56 -2.1 85,958 + HMPREF1058_RS01590 0.57 -1.9 85,958 + HMPREF1058_RS01590 0.57 -2.2 85,959 - HMPREF1058_RS01590 0.57 -2.3 85,959 - HMPREF1058_RS01590 0.57 +2.9 86,092 - +0.0 86,252 + HMPREF1058_RS01590 0.78 -2.7 86,253 - HMPREF1058_RS01590 0.78 -1.2 86,253 - HMPREF1058_RS01590 0.78 -1.6 86,271 + HMPREF1058_RS01590 0.80 -1.8 86,272 - HMPREF1058_RS01590 0.80 +0.5 86,273 + HMPREF1058_RS01590 0.80 -2.4 86,376 + HMPREF1058_RS01590 0.87 -1.6 86,377 - HMPREF1058_RS01590 0.87 -3.2 86,379 - HMPREF1058_RS01590 0.87 -2.9 86,469 + -1.4 86,869 + +0.0 86,871 + -3.5 86,987 + -0.7 86,988 - -1.7 86,988 - -2.1 86,988 - -3.1 87,094 - HMPREF1058_RS01585 0.15 -1.6 87,094 - HMPREF1058_RS01585 0.15 -0.7 87,229 + HMPREF1058_RS01585 0.24 -2.5 87,236 - HMPREF1058_RS01585 0.25 -1.5 87,437 + HMPREF1058_RS01585 0.39 -2.6 87,438 - HMPREF1058_RS01585 0.39 +1.3 87,500 + HMPREF1058_RS01585 0.43 -1.2 87,500 + HMPREF1058_RS01585 0.43 -0.6 87,501 - HMPREF1058_RS01585 0.43 -2.2 87,707 + HMPREF1058_RS01585 0.57 -1.4 87,767 + HMPREF1058_RS01585 0.61 -2.6 87,825 - HMPREF1058_RS01585 0.65 -2.4 87,832 + HMPREF1058_RS01585 0.66 -3.7 87,977 + HMPREF1058_RS01585 0.76 -3.3 87,977 + HMPREF1058_RS01585 0.76 -0.8 88,010 + HMPREF1058_RS01585 0.78 -4.1 88,077 - HMPREF1058_RS01585 0.83 -1.6 88,257 + -1.8 88,277 - +1.3 88,292 - -1.1 88,313 - -2.8 88,374 + -0.0 88,403 - -0.8 88,412 - -1.3 88,473 + HMPREF1058_RS01580 0.12 -1.9 88,473 + HMPREF1058_RS01580 0.12 +0.4 88,474 - HMPREF1058_RS01580 0.12 -0.1 88,497 + HMPREF1058_RS01580 0.18 +0.7 88,498 - HMPREF1058_RS01580 0.18 +0.1 88,526 - HMPREF1058_RS01580 0.25 +1.0 88,578 - HMPREF1058_RS01580 0.37 -0.1 88,588 + HMPREF1058_RS01580 0.40 -1.1 88,594 - HMPREF1058_RS01580 0.41 -1.0 88,620 + HMPREF1058_RS01580 0.48 +2.9 88,866 - -2.0 88,966 - HMPREF1058_RS01575 0.23 -0.4 88,966 - HMPREF1058_RS01575 0.23 -0.4 88,976 + HMPREF1058_RS01575 0.24 +1.3 88,976 + HMPREF1058_RS01575 0.24 -1.7 88,976 + HMPREF1058_RS01575 0.24 -0.1 89,031 + HMPREF1058_RS01575 0.32 -1.0 89,031 + HMPREF1058_RS01575 0.32 +0.2 89,032 - HMPREF1058_RS01575 0.32 -2.4 89,054 - HMPREF1058_RS01575 0.35 -2.8 89,103 - HMPREF1058_RS01575 0.42 -2.3 89,189 + HMPREF1058_RS01575 0.53 -2.5 89,190 - HMPREF1058_RS01575 0.54 -2.6 89,194 - HMPREF1058_RS01575 0.54 -0.7 89,194 - HMPREF1058_RS01575 0.54 -1.8
Or see this region's nucleotide sequence