Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01560 and HMPREF1058_RS01555 are separated by 21 nucleotides HMPREF1058_RS01555 and HMPREF1058_RS01550 are separated by 25 nucleotides
HMPREF1058_RS01560: HMPREF1058_RS01560 - ABC transporter ATP-binding protein, at 91,834 to 92,853
_RS01560
HMPREF1058_RS01555: HMPREF1058_RS01555 - cobalt-precorrin-5B (C(1))-methyltransferase, at 92,875 to 94,671
_RS01555
HMPREF1058_RS01550: HMPREF1058_RS01550 - precorrin-4 C(11)-methyltransferase, at 94,697 to 96,508
_RS01550
Position (kb) 92
93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.924 kb on - strand at 91.985 kb on + strand, within HMPREF1058_RS01560 at 91.985 kb on + strand, within HMPREF1058_RS01560 at 92.164 kb on + strand, within HMPREF1058_RS01560 at 92.266 kb on - strand, within HMPREF1058_RS01560 at 92.450 kb on + strand, within HMPREF1058_RS01560 at 92.655 kb on + strand, within HMPREF1058_RS01560 at 92.655 kb on + strand, within HMPREF1058_RS01560 at 92.660 kb on - strand, within HMPREF1058_RS01560 at 92.745 kb on + strand, within HMPREF1058_RS01560 at 92.763 kb on + strand at 92.764 kb on - strand at 92.764 kb on - strand at 92.764 kb on - strand at 92.803 kb on - strand at 92.803 kb on - strand at 92.836 kb on - strand at 93.104 kb on - strand, within HMPREF1058_RS01555 at 93.184 kb on - strand, within HMPREF1058_RS01555 at 93.350 kb on - strand, within HMPREF1058_RS01555 at 93.516 kb on + strand, within HMPREF1058_RS01555 at 93.559 kb on + strand, within HMPREF1058_RS01555 at 93.676 kb on - strand, within HMPREF1058_RS01555 at 93.829 kb on - strand, within HMPREF1058_RS01555 at 94.151 kb on + strand, within HMPREF1058_RS01555 at 94.151 kb on + strand, within HMPREF1058_RS01555 at 94.237 kb on - strand, within HMPREF1058_RS01555 at 94.237 kb on - strand, within HMPREF1058_RS01555 at 94.411 kb on + strand, within HMPREF1058_RS01555 at 94.593 kb on - strand at 94.672 kb on - strand at 94.672 kb on - strand at 94.761 kb on - strand at 94.772 kb on + strand at 94.782 kb on - strand at 94.811 kb on + strand at 94.815 kb on - strand at 94.815 kb on - strand at 94.874 kb on - strand at 94.953 kb on - strand, within HMPREF1058_RS01550 at 94.994 kb on + strand, within HMPREF1058_RS01550 at 95.045 kb on + strand, within HMPREF1058_RS01550 at 95.046 kb on - strand, within HMPREF1058_RS01550 at 95.133 kb on + strand, within HMPREF1058_RS01550 at 95.213 kb on + strand, within HMPREF1058_RS01550 at 95.218 kb on + strand, within HMPREF1058_RS01550 at 95.435 kb on + strand, within HMPREF1058_RS01550 at 95.437 kb on + strand, within HMPREF1058_RS01550 at 95.627 kb on - strand, within HMPREF1058_RS01550
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 91,924 - +0.0 91,985 + HMPREF1058_RS01560 0.15 +0.7 91,985 + HMPREF1058_RS01560 0.15 -1.6 92,164 + HMPREF1058_RS01560 0.32 +1.5 92,266 - HMPREF1058_RS01560 0.42 -2.6 92,450 + HMPREF1058_RS01560 0.60 -2.3 92,655 + HMPREF1058_RS01560 0.80 -0.7 92,655 + HMPREF1058_RS01560 0.80 -1.6 92,660 - HMPREF1058_RS01560 0.81 -1.1 92,745 + HMPREF1058_RS01560 0.89 -1.1 92,763 + -2.0 92,764 - -0.3 92,764 - -2.4 92,764 - +0.4 92,803 - -2.0 92,803 - +0.1 92,836 - +1.4 93,104 - HMPREF1058_RS01555 0.13 -0.8 93,184 - HMPREF1058_RS01555 0.17 -1.0 93,350 - HMPREF1058_RS01555 0.26 -1.0 93,516 + HMPREF1058_RS01555 0.36 -1.0 93,559 + HMPREF1058_RS01555 0.38 -1.0 93,676 - HMPREF1058_RS01555 0.45 +1.9 93,829 - HMPREF1058_RS01555 0.53 +1.3 94,151 + HMPREF1058_RS01555 0.71 -1.1 94,151 + HMPREF1058_RS01555 0.71 -2.1 94,237 - HMPREF1058_RS01555 0.76 -1.6 94,237 - HMPREF1058_RS01555 0.76 -1.9 94,411 + HMPREF1058_RS01555 0.85 +0.3 94,593 - -1.2 94,672 - +0.3 94,672 - +1.4 94,761 - -1.2 94,772 + -2.4 94,782 - -0.6 94,811 + -0.5 94,815 - +0.8 94,815 - +0.0 94,874 - -2.2 94,953 - HMPREF1058_RS01550 0.14 -1.1 94,994 + HMPREF1058_RS01550 0.16 -1.1 95,045 + HMPREF1058_RS01550 0.19 -1.8 95,046 - HMPREF1058_RS01550 0.19 -2.3 95,133 + HMPREF1058_RS01550 0.24 -0.1 95,213 + HMPREF1058_RS01550 0.28 -2.5 95,218 + HMPREF1058_RS01550 0.29 -2.9 95,435 + HMPREF1058_RS01550 0.41 +0.0 95,437 + HMPREF1058_RS01550 0.41 -1.1 95,627 - HMPREF1058_RS01550 0.51 -3.6
Or see this region's nucleotide sequence