Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01555 and HMPREF1058_RS01550 are separated by 25 nucleotides HMPREF1058_RS01550 and HMPREF1058_RS01545 are separated by 21 nucleotides
HMPREF1058_RS01555: HMPREF1058_RS01555 - cobalt-precorrin-5B (C(1))-methyltransferase, at 92,875 to 94,671
_RS01555
HMPREF1058_RS01550: HMPREF1058_RS01550 - precorrin-4 C(11)-methyltransferase, at 94,697 to 96,508
_RS01550
HMPREF1058_RS01545: HMPREF1058_RS01545 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 96,530 to 97,711
_RS01545
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.829 kb on - strand, within HMPREF1058_RS01555 at 94.151 kb on + strand, within HMPREF1058_RS01555 at 94.151 kb on + strand, within HMPREF1058_RS01555 at 94.237 kb on - strand, within HMPREF1058_RS01555 at 94.237 kb on - strand, within HMPREF1058_RS01555 at 94.411 kb on + strand, within HMPREF1058_RS01555 at 94.593 kb on - strand at 94.672 kb on - strand at 94.672 kb on - strand at 94.761 kb on - strand at 94.772 kb on + strand at 94.782 kb on - strand at 94.811 kb on + strand at 94.815 kb on - strand at 94.815 kb on - strand at 94.874 kb on - strand at 94.953 kb on - strand, within HMPREF1058_RS01550 at 94.994 kb on + strand, within HMPREF1058_RS01550 at 95.045 kb on + strand, within HMPREF1058_RS01550 at 95.046 kb on - strand, within HMPREF1058_RS01550 at 95.133 kb on + strand, within HMPREF1058_RS01550 at 95.213 kb on + strand, within HMPREF1058_RS01550 at 95.218 kb on + strand, within HMPREF1058_RS01550 at 95.435 kb on + strand, within HMPREF1058_RS01550 at 95.437 kb on + strand, within HMPREF1058_RS01550 at 95.627 kb on - strand, within HMPREF1058_RS01550 at 95.781 kb on - strand, within HMPREF1058_RS01550 at 95.781 kb on - strand, within HMPREF1058_RS01550 at 95.878 kb on + strand, within HMPREF1058_RS01550 at 95.879 kb on - strand, within HMPREF1058_RS01550 at 95.879 kb on - strand, within HMPREF1058_RS01550 at 95.880 kb on + strand, within HMPREF1058_RS01550 at 95.881 kb on - strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.882 kb on + strand, within HMPREF1058_RS01550 at 95.884 kb on + strand, within HMPREF1058_RS01550 at 95.884 kb on + strand, within HMPREF1058_RS01550 at 95.886 kb on + strand, within HMPREF1058_RS01550 at 95.887 kb on - strand, within HMPREF1058_RS01550 at 95.954 kb on + strand, within HMPREF1058_RS01550 at 95.954 kb on + strand, within HMPREF1058_RS01550 at 95.983 kb on - strand, within HMPREF1058_RS01550 at 96.093 kb on + strand, within HMPREF1058_RS01550 at 96.280 kb on - strand, within HMPREF1058_RS01550 at 96.290 kb on + strand, within HMPREF1058_RS01550 at 96.372 kb on - strand at 96.426 kb on + strand at 96.617 kb on - strand at 96.737 kb on + strand, within HMPREF1058_RS01545 at 96.739 kb on + strand, within HMPREF1058_RS01545 at 96.979 kb on + strand, within HMPREF1058_RS01545 at 97.098 kb on - strand, within HMPREF1058_RS01545 at 97.154 kb on - strand, within HMPREF1058_RS01545 at 97.221 kb on + strand, within HMPREF1058_RS01545 at 97.222 kb on - strand, within HMPREF1058_RS01545 at 97.302 kb on - strand, within HMPREF1058_RS01545 at 97.375 kb on + strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 93,829 - HMPREF1058_RS01555 0.53 +1.3 94,151 + HMPREF1058_RS01555 0.71 -1.1 94,151 + HMPREF1058_RS01555 0.71 -2.1 94,237 - HMPREF1058_RS01555 0.76 -1.6 94,237 - HMPREF1058_RS01555 0.76 -1.9 94,411 + HMPREF1058_RS01555 0.85 +0.3 94,593 - -1.2 94,672 - +0.3 94,672 - +1.4 94,761 - -1.2 94,772 + -2.4 94,782 - -0.6 94,811 + -0.5 94,815 - +0.8 94,815 - +0.0 94,874 - -2.2 94,953 - HMPREF1058_RS01550 0.14 -1.1 94,994 + HMPREF1058_RS01550 0.16 -1.1 95,045 + HMPREF1058_RS01550 0.19 -1.8 95,046 - HMPREF1058_RS01550 0.19 -2.3 95,133 + HMPREF1058_RS01550 0.24 -0.1 95,213 + HMPREF1058_RS01550 0.28 -2.5 95,218 + HMPREF1058_RS01550 0.29 -2.9 95,435 + HMPREF1058_RS01550 0.41 +0.0 95,437 + HMPREF1058_RS01550 0.41 -1.1 95,627 - HMPREF1058_RS01550 0.51 -3.6 95,781 - HMPREF1058_RS01550 0.60 -0.8 95,781 - HMPREF1058_RS01550 0.60 -1.1 95,878 + HMPREF1058_RS01550 0.65 -0.8 95,879 - HMPREF1058_RS01550 0.65 -1.1 95,879 - HMPREF1058_RS01550 0.65 -0.3 95,880 + HMPREF1058_RS01550 0.65 -1.2 95,881 - HMPREF1058_RS01550 0.65 -2.5 95,882 + HMPREF1058_RS01550 0.65 +0.9 95,882 + HMPREF1058_RS01550 0.65 -2.6 95,882 + HMPREF1058_RS01550 0.65 -2.1 95,882 + HMPREF1058_RS01550 0.65 -1.2 95,884 + HMPREF1058_RS01550 0.66 +0.3 95,884 + HMPREF1058_RS01550 0.66 -1.6 95,886 + HMPREF1058_RS01550 0.66 +1.9 95,887 - HMPREF1058_RS01550 0.66 -1.8 95,954 + HMPREF1058_RS01550 0.69 -1.6 95,954 + HMPREF1058_RS01550 0.69 -0.4 95,983 - HMPREF1058_RS01550 0.71 -0.1 96,093 + HMPREF1058_RS01550 0.77 +0.4 96,280 - HMPREF1058_RS01550 0.87 -1.0 96,290 + HMPREF1058_RS01550 0.88 +0.0 96,372 - -0.5 96,426 + -1.0 96,617 - +0.0 96,737 + HMPREF1058_RS01545 0.18 -0.8 96,739 + HMPREF1058_RS01545 0.18 -1.6 96,979 + HMPREF1058_RS01545 0.38 +0.4 97,098 - HMPREF1058_RS01545 0.48 -1.1 97,154 - HMPREF1058_RS01545 0.53 -1.1 97,221 + HMPREF1058_RS01545 0.58 -3.3 97,222 - HMPREF1058_RS01545 0.59 -0.5 97,302 - HMPREF1058_RS01545 0.65 -1.5 97,375 + HMPREF1058_RS01545 0.71 +0.0 97,376 - HMPREF1058_RS01545 0.72 -2.5 97,376 - HMPREF1058_RS01545 0.72 -2.6
Or see this region's nucleotide sequence