Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01545 and HMPREF1058_RS01540 are separated by 4 nucleotides HMPREF1058_RS01540 and HMPREF1058_RS01535 are separated by 679 nucleotides
HMPREF1058_RS01545: HMPREF1058_RS01545 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 96,530 to 97,711
_RS01545
HMPREF1058_RS01540: HMPREF1058_RS01540 - precorrin-3B C(17)-methyltransferase, at 97,716 to 99,122
_RS01540
HMPREF1058_RS01535: HMPREF1058_RS01535 - flavin reductase family protein, at 99,802 to 100,362
_RS01535
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.737 kb on + strand, within HMPREF1058_RS01545 at 96.739 kb on + strand, within HMPREF1058_RS01545 at 96.979 kb on + strand, within HMPREF1058_RS01545 at 97.098 kb on - strand, within HMPREF1058_RS01545 at 97.154 kb on - strand, within HMPREF1058_RS01545 at 97.221 kb on + strand, within HMPREF1058_RS01545 at 97.222 kb on - strand, within HMPREF1058_RS01545 at 97.302 kb on - strand, within HMPREF1058_RS01545 at 97.375 kb on + strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.687 kb on + strand at 97.691 kb on + strand at 97.696 kb on + strand at 97.696 kb on + strand at 97.699 kb on - strand at 97.717 kb on + strand at 97.718 kb on - strand at 97.719 kb on + strand at 97.719 kb on + strand at 97.720 kb on - strand at 97.720 kb on - strand at 97.761 kb on - strand at 97.816 kb on - strand at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.981 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.156 kb on + strand, within HMPREF1058_RS01540 at 98.189 kb on + strand, within HMPREF1058_RS01540 at 98.190 kb on - strand, within HMPREF1058_RS01540 at 98.226 kb on + strand, within HMPREF1058_RS01540 at 98.303 kb on + strand, within HMPREF1058_RS01540 at 98.345 kb on + strand, within HMPREF1058_RS01540 at 98.393 kb on - strand, within HMPREF1058_RS01540 at 98.460 kb on - strand, within HMPREF1058_RS01540 at 98.783 kb on + strand, within HMPREF1058_RS01540 at 98.793 kb on + strand, within HMPREF1058_RS01540 at 98.794 kb on - strand, within HMPREF1058_RS01540 at 98.889 kb on + strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.963 kb on + strand, within HMPREF1058_RS01540 at 98.986 kb on + strand at 99.007 kb on + strand at 99.011 kb on - strand at 99.015 kb on - strand at 99.015 kb on - strand at 99.051 kb on + strand at 99.066 kb on + strand at 99.068 kb on + strand at 99.106 kb on - strand at 99.128 kb on - strand at 99.131 kb on - strand at 99.139 kb on - strand at 99.350 kb on + strand at 99.350 kb on + strand at 99.470 kb on + strand at 99.497 kb on + strand at 99.497 kb on + strand at 99.498 kb on - strand at 99.498 kb on - strand at 99.539 kb on + strand at 99.661 kb on + strand at 99.662 kb on - strand at 99.785 kb on + strand at 99.786 kb on - strand at 99.895 kb on - strand, within HMPREF1058_RS01535 at 99.943 kb on + strand, within HMPREF1058_RS01535 at 99.958 kb on + strand, within HMPREF1058_RS01535
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 96,737 + HMPREF1058_RS01545 0.18 -0.8 96,739 + HMPREF1058_RS01545 0.18 -1.6 96,979 + HMPREF1058_RS01545 0.38 +0.4 97,098 - HMPREF1058_RS01545 0.48 -1.1 97,154 - HMPREF1058_RS01545 0.53 -1.1 97,221 + HMPREF1058_RS01545 0.58 -3.3 97,222 - HMPREF1058_RS01545 0.59 -0.5 97,302 - HMPREF1058_RS01545 0.65 -1.5 97,375 + HMPREF1058_RS01545 0.71 +0.0 97,376 - HMPREF1058_RS01545 0.72 -2.5 97,376 - HMPREF1058_RS01545 0.72 -2.6 97,687 + -1.8 97,691 + -0.1 97,696 + -1.3 97,696 + -0.4 97,699 - -0.3 97,717 + -2.1 97,718 - +0.9 97,719 + -0.8 97,719 + +0.2 97,720 - +0.9 97,720 - +0.9 97,761 - +0.0 97,816 - -0.9 97,979 - HMPREF1058_RS01540 0.19 -1.7 97,979 - HMPREF1058_RS01540 0.19 -2.3 97,979 - HMPREF1058_RS01540 0.19 -0.7 97,981 - HMPREF1058_RS01540 0.19 -1.4 98,014 - HMPREF1058_RS01540 0.21 -0.5 98,014 - HMPREF1058_RS01540 0.21 -0.3 98,081 - HMPREF1058_RS01540 0.26 -2.5 98,081 - HMPREF1058_RS01540 0.26 +0.2 98,156 + HMPREF1058_RS01540 0.31 -2.0 98,189 + HMPREF1058_RS01540 0.34 -0.1 98,190 - HMPREF1058_RS01540 0.34 -1.5 98,226 + HMPREF1058_RS01540 0.36 -2.1 98,303 + HMPREF1058_RS01540 0.42 -1.5 98,345 + HMPREF1058_RS01540 0.45 -2.6 98,393 - HMPREF1058_RS01540 0.48 -2.3 98,460 - HMPREF1058_RS01540 0.53 -2.4 98,783 + HMPREF1058_RS01540 0.76 -0.3 98,793 + HMPREF1058_RS01540 0.77 -1.3 98,794 - HMPREF1058_RS01540 0.77 -1.7 98,889 + HMPREF1058_RS01540 0.83 -0.6 98,962 - HMPREF1058_RS01540 0.89 -1.8 98,962 - HMPREF1058_RS01540 0.89 -1.3 98,963 + HMPREF1058_RS01540 0.89 -1.8 98,986 + -0.7 99,007 + +0.3 99,011 - -1.7 99,015 - -1.8 99,015 - -2.2 99,051 + -1.8 99,066 + -1.6 99,068 + -2.2 99,106 - -1.7 99,128 - -0.1 99,131 - -0.7 99,139 - +1.2 99,350 + +0.7 99,350 + +0.9 99,470 + +0.4 99,497 + -1.8 99,497 + -1.8 99,498 - -0.6 99,498 - +1.1 99,539 + -0.5 99,661 + +1.7 99,662 - -0.9 99,785 + -2.2 99,786 - +1.2 99,895 - HMPREF1058_RS01535 0.17 +1.1 99,943 + HMPREF1058_RS01535 0.25 -0.9 99,958 + HMPREF1058_RS01535 0.28 -1.9
Or see this region's nucleotide sequence