Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01410 and HMPREF1058_RS01405 are separated by 235 nucleotides HMPREF1058_RS01405 and HMPREF1058_RS01400 overlap by 4 nucleotides HMPREF1058_RS01400 and HMPREF1058_RS01395 overlap by 1 nucleotides
HMPREF1058_RS01410: HMPREF1058_RS01410 - putative transporter, at 134,942 to 136,630
_RS01410
HMPREF1058_RS01405: HMPREF1058_RS01405 - cobyrinate a,c-diamide synthase, at 136,866 to 138,194
_RS01405
HMPREF1058_RS01400: HMPREF1058_RS01400 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 138,191 to 138,766
_RS01400
HMPREF1058_RS01395: HMPREF1058_RS01395 - cobyric acid synthase, at 138,766 to 140,256
_RS01395
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 135.917 kb on + strand, within HMPREF1058_RS01410 at 135.938 kb on + strand, within HMPREF1058_RS01410 at 136.137 kb on - strand, within HMPREF1058_RS01410 at 136.152 kb on - strand, within HMPREF1058_RS01410 at 136.154 kb on - strand, within HMPREF1058_RS01410 at 136.268 kb on + strand, within HMPREF1058_RS01410 at 136.269 kb on - strand, within HMPREF1058_RS01410 at 136.270 kb on + strand, within HMPREF1058_RS01410 at 136.271 kb on - strand, within HMPREF1058_RS01410 at 136.370 kb on + strand, within HMPREF1058_RS01410 at 136.391 kb on + strand, within HMPREF1058_RS01410 at 136.391 kb on + strand, within HMPREF1058_RS01410 at 136.392 kb on - strand, within HMPREF1058_RS01410 at 136.460 kb on + strand, within HMPREF1058_RS01410 at 136.595 kb on - strand at 136.643 kb on - strand at 136.658 kb on - strand at 136.661 kb on - strand at 136.680 kb on + strand at 136.680 kb on + strand at 136.681 kb on - strand at 136.681 kb on - strand at 136.724 kb on + strand at 136.746 kb on + strand at 136.767 kb on + strand at 136.768 kb on - strand at 136.774 kb on + strand at 136.785 kb on + strand at 136.857 kb on + strand at 136.923 kb on - strand at 137.000 kb on + strand, within HMPREF1058_RS01405 at 137.091 kb on - strand, within HMPREF1058_RS01405 at 137.171 kb on + strand, within HMPREF1058_RS01405 at 137.213 kb on + strand, within HMPREF1058_RS01405 at 137.216 kb on - strand, within HMPREF1058_RS01405 at 137.216 kb on - strand, within HMPREF1058_RS01405 at 137.218 kb on + strand, within HMPREF1058_RS01405 at 137.231 kb on + strand, within HMPREF1058_RS01405 at 137.232 kb on - strand, within HMPREF1058_RS01405 at 137.538 kb on - strand, within HMPREF1058_RS01405 at 137.555 kb on + strand, within HMPREF1058_RS01405 at 137.651 kb on + strand, within HMPREF1058_RS01405 at 137.655 kb on + strand, within HMPREF1058_RS01405 at 137.656 kb on - strand, within HMPREF1058_RS01405 at 137.656 kb on - strand, within HMPREF1058_RS01405 at 137.657 kb on + strand, within HMPREF1058_RS01405 at 137.658 kb on - strand, within HMPREF1058_RS01405 at 137.669 kb on - strand, within HMPREF1058_RS01405 at 137.697 kb on - strand, within HMPREF1058_RS01405 at 137.697 kb on - strand, within HMPREF1058_RS01405 at 137.714 kb on - strand, within HMPREF1058_RS01405 at 137.715 kb on + strand, within HMPREF1058_RS01405 at 137.748 kb on + strand, within HMPREF1058_RS01405 at 137.789 kb on - strand, within HMPREF1058_RS01405 at 137.826 kb on + strand, within HMPREF1058_RS01405 at 137.974 kb on + strand, within HMPREF1058_RS01405 at 137.975 kb on - strand, within HMPREF1058_RS01405 at 138.116 kb on + strand at 138.116 kb on + strand at 138.117 kb on - strand at 138.121 kb on - strand at 138.143 kb on + strand at 138.144 kb on - strand at 138.144 kb on - strand at 138.151 kb on + strand at 138.152 kb on - strand at 138.292 kb on + strand, within HMPREF1058_RS01400 at 138.293 kb on - strand, within HMPREF1058_RS01400 at 138.293 kb on - strand, within HMPREF1058_RS01400 at 138.336 kb on + strand, within HMPREF1058_RS01400 at 138.517 kb on + strand, within HMPREF1058_RS01400 at 138.518 kb on - strand, within HMPREF1058_RS01400 at 138.641 kb on - strand, within HMPREF1058_RS01400 at 138.744 kb on - strand at 138.956 kb on + strand, within HMPREF1058_RS01395 at 139.043 kb on + strand, within HMPREF1058_RS01395 at 139.158 kb on + strand, within HMPREF1058_RS01395 at 139.170 kb on - strand, within HMPREF1058_RS01395 at 139.188 kb on + strand, within HMPREF1058_RS01395 at 139.188 kb on + strand, within HMPREF1058_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 135,917 + HMPREF1058_RS01410 0.58 +0.2 135,938 + HMPREF1058_RS01410 0.59 -1.4 136,137 - HMPREF1058_RS01410 0.71 -0.7 136,152 - HMPREF1058_RS01410 0.72 -0.1 136,154 - HMPREF1058_RS01410 0.72 -1.3 136,268 + HMPREF1058_RS01410 0.79 -1.5 136,269 - HMPREF1058_RS01410 0.79 -0.8 136,270 + HMPREF1058_RS01410 0.79 +1.9 136,271 - HMPREF1058_RS01410 0.79 -0.2 136,370 + HMPREF1058_RS01410 0.85 +0.5 136,391 + HMPREF1058_RS01410 0.86 +1.9 136,391 + HMPREF1058_RS01410 0.86 +0.3 136,392 - HMPREF1058_RS01410 0.86 +0.2 136,460 + HMPREF1058_RS01410 0.90 +0.8 136,595 - -0.3 136,643 - +0.1 136,658 - -1.6 136,661 - +2.4 136,680 + +0.0 136,680 + -0.1 136,681 - -0.8 136,681 - +1.4 136,724 + -0.7 136,746 + +0.7 136,767 + -0.7 136,768 - +2.1 136,774 + -2.1 136,785 + -1.3 136,857 + +0.7 136,923 - +0.0 137,000 + HMPREF1058_RS01405 0.10 -1.4 137,091 - HMPREF1058_RS01405 0.17 -1.0 137,171 + HMPREF1058_RS01405 0.23 -2.0 137,213 + HMPREF1058_RS01405 0.26 -1.5 137,216 - HMPREF1058_RS01405 0.26 -1.9 137,216 - HMPREF1058_RS01405 0.26 -0.5 137,218 + HMPREF1058_RS01405 0.26 -1.7 137,231 + HMPREF1058_RS01405 0.27 -0.2 137,232 - HMPREF1058_RS01405 0.28 +0.3 137,538 - HMPREF1058_RS01405 0.51 +0.5 137,555 + HMPREF1058_RS01405 0.52 +1.9 137,651 + HMPREF1058_RS01405 0.59 +2.9 137,655 + HMPREF1058_RS01405 0.59 -0.3 137,656 - HMPREF1058_RS01405 0.59 -1.9 137,656 - HMPREF1058_RS01405 0.59 -2.0 137,657 + HMPREF1058_RS01405 0.60 -1.5 137,658 - HMPREF1058_RS01405 0.60 -1.6 137,669 - HMPREF1058_RS01405 0.60 -1.2 137,697 - HMPREF1058_RS01405 0.63 -0.1 137,697 - HMPREF1058_RS01405 0.63 -0.5 137,714 - HMPREF1058_RS01405 0.64 -2.1 137,715 + HMPREF1058_RS01405 0.64 +0.7 137,748 + HMPREF1058_RS01405 0.66 -0.1 137,789 - HMPREF1058_RS01405 0.69 -0.3 137,826 + HMPREF1058_RS01405 0.72 -1.9 137,974 + HMPREF1058_RS01405 0.83 -1.8 137,975 - HMPREF1058_RS01405 0.83 +3.9 138,116 + -1.6 138,116 + -1.3 138,117 - +0.5 138,121 - -1.1 138,143 + -1.6 138,144 - -2.3 138,144 - -1.1 138,151 + +0.0 138,152 - -2.0 138,292 + HMPREF1058_RS01400 0.18 +0.6 138,293 - HMPREF1058_RS01400 0.18 +0.5 138,293 - HMPREF1058_RS01400 0.18 -1.2 138,336 + HMPREF1058_RS01400 0.25 -0.1 138,517 + HMPREF1058_RS01400 0.57 +2.1 138,518 - HMPREF1058_RS01400 0.57 -1.8 138,641 - HMPREF1058_RS01400 0.78 -2.0 138,744 - -0.1 138,956 + HMPREF1058_RS01395 0.13 -0.1 139,043 + HMPREF1058_RS01395 0.19 -0.8 139,158 + HMPREF1058_RS01395 0.26 -2.7 139,170 - HMPREF1058_RS01395 0.27 +0.0 139,188 + HMPREF1058_RS01395 0.28 -0.8 139,188 + HMPREF1058_RS01395 0.28 -0.5
Or see this region's nucleotide sequence