Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01390

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
139,292	+		HMPREF1058_RS01395	0.35	-0.1
139,292	+		HMPREF1058_RS01395	0.35	-0.7
139,292	+		HMPREF1058_RS01395	0.35	-1.1
139,307	-		HMPREF1058_RS01395	0.36	+0.7
139,323	-		HMPREF1058_RS01395	0.37	-1.6
139,431	+		HMPREF1058_RS01395	0.45	-0.7
139,431	+		HMPREF1058_RS01395	0.45	-1.6
139,451	+		HMPREF1058_RS01395	0.46	-1.1
139,456	+		HMPREF1058_RS01395	0.46	-3.0
139,456	+		HMPREF1058_RS01395	0.46	-1.7
139,456	+		HMPREF1058_RS01395	0.46	+0.9
139,467	+		HMPREF1058_RS01395	0.47	+0.0
139,467	+		HMPREF1058_RS01395	0.47	-1.2
139,469	+		HMPREF1058_RS01395	0.47	-1.7
139,470	-		HMPREF1058_RS01395	0.47	+0.0
139,506	+		HMPREF1058_RS01395	0.50	-0.1
139,619	-		HMPREF1058_RS01395	0.57	-0.7
139,622	-		HMPREF1058_RS01395	0.57	-2.3
139,659	+		HMPREF1058_RS01395	0.60	-0.5
139,873	-		HMPREF1058_RS01395	0.74	-2.2
139,875	+		HMPREF1058_RS01395	0.74	-0.6
139,955	+		HMPREF1058_RS01395	0.80	+0.9
139,955	+		HMPREF1058_RS01395	0.80	+1.9
139,956	-		HMPREF1058_RS01395	0.80	-0.8
139,995	-		HMPREF1058_RS01395	0.82	+0.5
140,099	+		HMPREF1058_RS01395	0.89	-1.1
140,165	-				+0.0
140,184	+				-2.5
140,184	+				-1.1
140,276	+				-1.9
140,282	+				-1.3
140,320	+				-0.7
140,381	-		HMPREF1058_RS01390	0.13	-0.6
140,402	+		HMPREF1058_RS01390	0.15	-0.6
140,578	+		HMPREF1058_RS01390	0.33	-0.3
140,590	+		HMPREF1058_RS01390	0.34	-0.0
140,591	-		HMPREF1058_RS01390	0.34	-2.3
140,591	-		HMPREF1058_RS01390	0.34	-0.4
140,597	-				+0.9
140,597	-		HMPREF1058_RS01390	0.34	-3.2
140,697	+		HMPREF1058_RS01390	0.44	-1.1
140,697	+		HMPREF1058_RS01390	0.44	-0.7
140,856	-		HMPREF1058_RS01390	0.60	-2.7
140,858	-		HMPREF1058_RS01390	0.60	-1.8
140,946	-		HMPREF1058_RS01390	0.69	-1.7
140,988	+		HMPREF1058_RS01390	0.73	-2.9
141,068	-		HMPREF1058_RS01390	0.81	-1.2
141,068	-		HMPREF1058_RS01390	0.81	-0.8
141,193	+				-2.2
141,249	-				+0.9
141,418	-		HMPREF1058_RS01385	0.19	-1.9
141,418	-		HMPREF1058_RS01385	0.19	-0.7
141,418	-		HMPREF1058_RS01385	0.19	+0.0
141,537	+		HMPREF1058_RS01385	0.32	-1.8
141,544	-		HMPREF1058_RS01385	0.32	-0.6
141,555	-		HMPREF1058_RS01385	0.34	+1.9
141,621	-		HMPREF1058_RS01385	0.41	+0.9
141,717	-		HMPREF1058_RS01385	0.51	-0.8
141,759	+		HMPREF1058_RS01385	0.56	-0.8
141,759	+		HMPREF1058_RS01385	0.56	+0.3
141,759	+		HMPREF1058_RS01385	0.56	-1.4
141,772	-		HMPREF1058_RS01385	0.57	-1.1
141,789	-		HMPREF1058_RS01385	0.59	+0.0
141,795	+		HMPREF1058_RS01385	0.59	-1.5
141,934	+		HMPREF1058_RS01385	0.74	-1.7
141,935	-		HMPREF1058_RS01385	0.74	+3.9
141,935	-		HMPREF1058_RS01385	0.74	+0.9
142,025	-		HMPREF1058_RS01385	0.84	+0.0
142,042	+		HMPREF1058_RS01385	0.86	-0.5
142,053	+		HMPREF1058_RS01385	0.87	-1.7
142,053	+		HMPREF1058_RS01385	0.87	-1.1
142,063	-		HMPREF1058_RS01385	0.88	-0.8
142,095	+				-2.2
142,110	-				-1.4
142,110	-				-1.8
142,139	+				-4.0
142,178	+				+0.9