Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00700

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
9,698	+		HMPREF1058_RS00705	0.44	+0.6
9,701	+		HMPREF1058_RS00705	0.44	+1.6
9,701	+		HMPREF1058_RS00705	0.44	-1.1
9,701	+		HMPREF1058_RS00705	0.44	-0.4
9,701	+		HMPREF1058_RS00705	0.44	-1.5
9,702	-		HMPREF1058_RS00705	0.44	+0.0
9,702	-		HMPREF1058_RS00705	0.44	+0.5
9,702	-		HMPREF1058_RS00705	0.44	+1.0
9,702	-		HMPREF1058_RS00705	0.44	-1.2
9,702	-		HMPREF1058_RS00705	0.44	+0.5
9,704	-		HMPREF1058_RS00705	0.44	+0.4
9,801	-		HMPREF1058_RS00705	0.50	-1.1
9,877	-		HMPREF1058_RS00705	0.55	+1.0
9,877	-		HMPREF1058_RS00705	0.55	-0.4
9,939	+		HMPREF1058_RS00705	0.59	-0.7
9,939	+		HMPREF1058_RS00705	0.59	-0.9
9,939	+		HMPREF1058_RS00705	0.59	+0.6
9,939	+		HMPREF1058_RS00705	0.59	-0.4
9,939	+		HMPREF1058_RS00705	0.59	+0.9
9,940	-		HMPREF1058_RS00705	0.59	+0.4
9,950	+		HMPREF1058_RS00705	0.60	+1.2
9,951	-		HMPREF1058_RS00705	0.60	+1.8
10,050	+		HMPREF1058_RS00705	0.66	+1.2
10,050	+		HMPREF1058_RS00705	0.66	+0.8
10,051	-		HMPREF1058_RS00705	0.67	-0.3
10,051	-		HMPREF1058_RS00705	0.67	-1.6
10,182	+		HMPREF1058_RS00705	0.75	-1.7
10,186	+		HMPREF1058_RS00705	0.75	-0.5
10,187	-		HMPREF1058_RS00705	0.75	+0.5
10,199	-		HMPREF1058_RS00705	0.76	-2.4
10,202	+		HMPREF1058_RS00705	0.76	+0.2
10,238	+		HMPREF1058_RS00705	0.79	+0.7
10,238	+		HMPREF1058_RS00705	0.79	-0.1
10,250	+		HMPREF1058_RS00705	0.79	-1.8
10,250	+		HMPREF1058_RS00705	0.79	-0.2
10,258	+		HMPREF1058_RS00705	0.80	+2.3
10,258	+		HMPREF1058_RS00705	0.80	-0.1
10,258	+		HMPREF1058_RS00705	0.80	-0.5
10,260	+		HMPREF1058_RS00705	0.80	+0.3
10,261	-		HMPREF1058_RS00705	0.80	-0.2
10,394	+		HMPREF1058_RS00705	0.89	+0.8
10,397	-		HMPREF1058_RS00705	0.89	-0.2
10,431	+				-0.2
10,476	+				-0.2
10,498	+				-0.1
10,562	+				-0.9
10,566	+				-0.5
10,569	-				-1.6
10,581	-				-2.5
10,581	-				-0.9
10,581	-				-3.2
10,583	-				-0.6
10,595	-				-2.5
10,666	+				-1.1
10,666	+				+0.1
10,670	+				-2.3
10,671	-				-3.0
10,671	-				-2.1
10,672	+				-2.7
10,703	+				-0.6
10,706	+		HMPREF1058_RS00700	0.10	+0.1
10,706	+		HMPREF1058_RS00700	0.10	-0.4
10,714	+		HMPREF1058_RS00700	0.11	-3.5
10,805	-		HMPREF1058_RS00700	0.19	-2.1
10,812	+		HMPREF1058_RS00700	0.20	-1.9
10,812	+		HMPREF1058_RS00700	0.20	-2.5
10,849	+		HMPREF1058_RS00700	0.24	-0.1
10,956	+		HMPREF1058_RS00700	0.34	-3.5
10,956	+		HMPREF1058_RS00700	0.34	-1.3
10,957	-		HMPREF1058_RS00700	0.34	-3.1
11,119	+		HMPREF1058_RS00700	0.49	-1.7
11,121	+		HMPREF1058_RS00700	0.50	-0.9
11,121	+		HMPREF1058_RS00700	0.50	-1.9
11,162	+		HMPREF1058_RS00700	0.53	-2.8
11,164	+		HMPREF1058_RS00700	0.54	-1.1
11,165	-		HMPREF1058_RS00700	0.54	-1.5
11,341	-		HMPREF1058_RS00700	0.70	-1.6
11,378	+		HMPREF1058_RS00700	0.74	-1.9
11,382	-		HMPREF1058_RS00700	0.74	-1.3
11,458	+		HMPREF1058_RS00700	0.82	-1.0
11,458	+		HMPREF1058_RS00700	0.82	-1.7
11,459	-		HMPREF1058_RS00700	0.82	-0.9
11,536	+		HMPREF1058_RS00700	0.89	-0.4
11,566	-				-0.4
11,615	-				-1.6
11,667	+				-0.3
11,667	+				+0.6
11,672	-				+0.5
11,691	+				-1.0
11,743	+				+0.6
11,852	-				+0.1
11,852	-				+1.3
11,852	-				+0.3
11,852	-				+1.4
11,854	-				-0.2
11,854	-				+0.6
11,859	+				-0.1
11,876	+		HMPREF1058_RS00695	0.10	-0.6
11,877	-		HMPREF1058_RS00695	0.10	+2.3
11,877	-		HMPREF1058_RS00695	0.10	-0.1
11,928	-		HMPREF1058_RS00695	0.14	-1.7
12,056	+		HMPREF1058_RS00695	0.23	+0.9
12,056	+		HMPREF1058_RS00695	0.23	+1.1
12,057	-		HMPREF1058_RS00695	0.23	+0.9
12,058	+		HMPREF1058_RS00695	0.23	+0.8
12,058	+		HMPREF1058_RS00695	0.23	-0.2
12,071	-		HMPREF1058_RS00695	0.24	+0.0
12,087	-		HMPREF1058_RS00695	0.26	-0.2
12,087	-		HMPREF1058_RS00695	0.26	-0.9
12,115	+		HMPREF1058_RS00695	0.28	-0.4
12,116	-		HMPREF1058_RS00695	0.28	-1.3
12,157	+		HMPREF1058_RS00695	0.31	-0.6
12,158	-		HMPREF1058_RS00695	0.31	+0.0
12,180	+		HMPREF1058_RS00695	0.32	+1.0
12,181	-		HMPREF1058_RS00695	0.32	+0.1
12,238	+		HMPREF1058_RS00695	0.36	-1.6
12,238	+		HMPREF1058_RS00695	0.36	-2.5
12,260	+		HMPREF1058_RS00695	0.38	-0.3
12,261	-		HMPREF1058_RS00695	0.38	+0.3
12,265	+		HMPREF1058_RS00695	0.38	-0.6
12,267	+		HMPREF1058_RS00695	0.39	-0.3
12,294	+		HMPREF1058_RS00695	0.40	-0.9
12,383	-		HMPREF1058_RS00695	0.47	-0.5
12,392	-		HMPREF1058_RS00695	0.48	+0.9
12,457	-		HMPREF1058_RS00695	0.52	+0.6
12,461	-		HMPREF1058_RS00695	0.52	+0.3
12,476	+		HMPREF1058_RS00695	0.54	-1.7
12,487	+		HMPREF1058_RS00695	0.54	+0.0
12,500	-		HMPREF1058_RS00695	0.55	-0.1
12,529	+		HMPREF1058_RS00695	0.57	-0.1