Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00525 and HMPREF1058_RS00520 are separated by 46 nucleotides HMPREF1058_RS00520 and HMPREF1058_RS00515 are separated by 95 nucleotides HMPREF1058_RS00515 and HMPREF1058_RS00510 are separated by 46 nucleotides HMPREF1058_RS00510 and HMPREF1058_RS00505 are separated by 4 nucleotides HMPREF1058_RS00505 and HMPREF1058_RS00500 overlap by 19 nucleotides
HMPREF1058_RS00525: HMPREF1058_RS00525 - DUF4290 domain-containing protein, at 60,419 to 61,045
_RS00525
HMPREF1058_RS00520: HMPREF1058_RS00520 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 61,092 to 61,781
_RS00520
HMPREF1058_RS00515: HMPREF1058_RS00515 - YicC family protein, at 61,877 to 62,752
_RS00515
HMPREF1058_RS00510: HMPREF1058_RS00510 - guanylate kinase, at 62,799 to 63,368
_RS00510
HMPREF1058_RS00505: HMPREF1058_RS00505 - hypothetical protein, at 63,373 to 63,555
_RS00505
HMPREF1058_RS00500: HMPREF1058_RS00500 - nicotinate-nucleotide adenylyltransferase, at 63,537 to 64,109
_RS00500
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.902 kb on - strand, within HMPREF1058_RS00525 at 60.902 kb on - strand, within HMPREF1058_RS00525 at 60.911 kb on - strand, within HMPREF1058_RS00525 at 61.003 kb on - strand at 61.039 kb on - strand at 61.048 kb on - strand at 61.048 kb on - strand at 61.068 kb on - strand at 61.801 kb on - strand at 61.869 kb on + strand at 61.872 kb on + strand at 61.981 kb on + strand, within HMPREF1058_RS00515 at 61.998 kb on + strand, within HMPREF1058_RS00515 at 62.029 kb on + strand, within HMPREF1058_RS00515 at 62.127 kb on + strand, within HMPREF1058_RS00515 at 62.138 kb on + strand, within HMPREF1058_RS00515 at 62.175 kb on + strand, within HMPREF1058_RS00515 at 62.510 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.622 kb on + strand, within HMPREF1058_RS00515 at 62.781 kb on + strand at 62.781 kb on + strand at 63.435 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.501 kb on + strand, within HMPREF1058_RS00505
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 60,902 - HMPREF1058_RS00525 0.77 +0.8 60,902 - HMPREF1058_RS00525 0.77 +0.5 60,911 - HMPREF1058_RS00525 0.78 +0.7 61,003 - +0.0 61,039 - -0.4 61,048 - +2.5 61,048 - +0.3 61,068 - -2.1 61,801 - +0.4 61,869 + -3.3 61,872 + -1.2 61,981 + HMPREF1058_RS00515 0.12 -1.3 61,998 + HMPREF1058_RS00515 0.14 -0.8 62,029 + HMPREF1058_RS00515 0.17 -0.8 62,127 + HMPREF1058_RS00515 0.29 -2.4 62,138 + HMPREF1058_RS00515 0.30 -1.3 62,175 + HMPREF1058_RS00515 0.34 -2.1 62,510 + HMPREF1058_RS00515 0.72 -0.9 62,567 + HMPREF1058_RS00515 0.79 -1.3 62,567 + HMPREF1058_RS00515 0.79 +0.3 62,622 + HMPREF1058_RS00515 0.85 -0.7 62,781 + +0.2 62,781 + -0.4 63,435 + HMPREF1058_RS00505 0.34 -0.5 63,478 + HMPREF1058_RS00505 0.57 -0.1 63,478 + HMPREF1058_RS00505 0.57 -0.7 63,501 + HMPREF1058_RS00505 0.70 +0.5
Or see this region's nucleotide sequence