Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00320 and HMPREF1058_RS00315 are separated by 133 nucleotides HMPREF1058_RS00315 and HMPREF1058_RS00310 are separated by 72 nucleotides HMPREF1058_RS00310 and HMPREF1058_RS00305 are separated by 22 nucleotides
HMPREF1058_RS00320: HMPREF1058_RS00320 - 5S ribosomal RNA, at 4,481 to 4,591
_RS00320
HMPREF1058_RS00315: HMPREF1058_RS00315 - NAAT family transporter, at 4,725 to 5,369
_RS00315
HMPREF1058_RS00310: HMPREF1058_RS00310 - zinc-binding alcohol dehydrogenase family protein, at 5,442 to 6,461
_RS00310
HMPREF1058_RS00305: HMPREF1058_RS00305 - L-fucose:H+ symporter permease, at 6,484 to 7,743
_RS00305
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.693 kb on - strand at 4.693 kb on - strand at 4.715 kb on + strand at 4.750 kb on + strand at 4.751 kb on - strand at 4.753 kb on + strand at 4.754 kb on - strand at 4.760 kb on + strand at 4.761 kb on - strand at 4.850 kb on + strand, within HMPREF1058_RS00315 at 4.869 kb on - strand, within HMPREF1058_RS00315 at 4.883 kb on + strand, within HMPREF1058_RS00315 at 4.883 kb on + strand, within HMPREF1058_RS00315 at 4.883 kb on + strand, within HMPREF1058_RS00315 at 4.994 kb on + strand, within HMPREF1058_RS00315 at 4.994 kb on + strand, within HMPREF1058_RS00315 at 4.994 kb on + strand, within HMPREF1058_RS00315 at 4.995 kb on - strand, within HMPREF1058_RS00315 at 5.012 kb on + strand, within HMPREF1058_RS00315 at 5.012 kb on + strand, within HMPREF1058_RS00315 at 5.061 kb on - strand, within HMPREF1058_RS00315 at 5.108 kb on + strand, within HMPREF1058_RS00315 at 5.110 kb on + strand, within HMPREF1058_RS00315 at 5.110 kb on + strand, within HMPREF1058_RS00315 at 5.110 kb on + strand, within HMPREF1058_RS00315 at 5.111 kb on - strand, within HMPREF1058_RS00315 at 5.111 kb on - strand, within HMPREF1058_RS00315 at 5.122 kb on + strand, within HMPREF1058_RS00315 at 5.144 kb on + strand, within HMPREF1058_RS00315 at 5.190 kb on + strand, within HMPREF1058_RS00315 at 5.191 kb on - strand, within HMPREF1058_RS00315 at 5.191 kb on - strand, within HMPREF1058_RS00315 at 5.196 kb on - strand, within HMPREF1058_RS00315 at 5.208 kb on - strand, within HMPREF1058_RS00315 at 5.209 kb on + strand, within HMPREF1058_RS00315 at 5.259 kb on - strand, within HMPREF1058_RS00315 at 5.285 kb on + strand, within HMPREF1058_RS00315 at 5.299 kb on + strand, within HMPREF1058_RS00315 at 5.305 kb on + strand at 5.305 kb on + strand at 5.336 kb on - strand at 5.431 kb on + strand at 5.431 kb on + strand at 5.431 kb on + strand at 5.434 kb on - strand at 5.458 kb on - strand at 5.460 kb on + strand at 5.463 kb on - strand at 5.529 kb on + strand at 5.529 kb on + strand at 5.562 kb on - strand, within HMPREF1058_RS00310 at 5.651 kb on - strand, within HMPREF1058_RS00310 at 5.655 kb on - strand, within HMPREF1058_RS00310 at 5.690 kb on + strand, within HMPREF1058_RS00310 at 5.691 kb on - strand, within HMPREF1058_RS00310 at 5.691 kb on - strand, within HMPREF1058_RS00310 at 5.691 kb on - strand, within HMPREF1058_RS00310 at 5.695 kb on - strand, within HMPREF1058_RS00310 at 5.733 kb on - strand, within HMPREF1058_RS00310 at 5.769 kb on + strand, within HMPREF1058_RS00310 at 5.814 kb on + strand, within HMPREF1058_RS00310 at 5.840 kb on + strand, within HMPREF1058_RS00310 at 5.840 kb on + strand, within HMPREF1058_RS00310 at 5.840 kb on + strand, within HMPREF1058_RS00310 at 5.928 kb on + strand, within HMPREF1058_RS00310 at 5.929 kb on - strand, within HMPREF1058_RS00310 at 5.933 kb on + strand, within HMPREF1058_RS00310 at 5.934 kb on - strand, within HMPREF1058_RS00310 at 5.981 kb on + strand, within HMPREF1058_RS00310 at 5.982 kb on - strand, within HMPREF1058_RS00310 at 5.982 kb on - strand, within HMPREF1058_RS00310 at 6.159 kb on + strand, within HMPREF1058_RS00310 at 6.328 kb on - strand, within HMPREF1058_RS00310 at 6.368 kb on + strand at 6.369 kb on - strand at 6.418 kb on - strand at 6.420 kb on + strand at 6.486 kb on - strand at 6.515 kb on + strand at 6.550 kb on - strand at 6.550 kb on - strand at 6.552 kb on + strand at 6.554 kb on + strand at 6.554 kb on + strand at 6.554 kb on + strand at 6.559 kb on + strand at 6.559 kb on + strand at 6.560 kb on - strand at 6.560 kb on - strand at 6.560 kb on - strand at 6.560 kb on - strand at 6.562 kb on - strand at 6.566 kb on + strand at 6.566 kb on + strand at 6.567 kb on - strand at 6.570 kb on + strand at 6.570 kb on + strand at 6.571 kb on - strand at 6.591 kb on + strand at 6.592 kb on - strand at 6.593 kb on + strand at 6.593 kb on + strand at 6.594 kb on - strand at 6.594 kb on - strand at 6.714 kb on + strand, within HMPREF1058_RS00305 at 6.715 kb on - strand, within HMPREF1058_RS00305 at 6.775 kb on + strand, within HMPREF1058_RS00305 at 6.783 kb on + strand, within HMPREF1058_RS00305 at 6.783 kb on + strand, within HMPREF1058_RS00305 at 6.787 kb on + strand, within HMPREF1058_RS00305 at 6.787 kb on + strand, within HMPREF1058_RS00305 at 6.811 kb on + strand, within HMPREF1058_RS00305 at 6.812 kb on - strand, within HMPREF1058_RS00305 at 6.817 kb on + strand, within HMPREF1058_RS00305 at 6.889 kb on - strand, within HMPREF1058_RS00305 at 6.891 kb on - strand, within HMPREF1058_RS00305 at 6.936 kb on - strand at 6.939 kb on + strand, within HMPREF1058_RS00305 at 6.948 kb on - strand, within HMPREF1058_RS00305 at 6.958 kb on + strand, within HMPREF1058_RS00305 at 7.065 kb on + strand, within HMPREF1058_RS00305 at 7.073 kb on - strand, within HMPREF1058_RS00305 at 7.087 kb on - strand, within HMPREF1058_RS00305 at 7.105 kb on - strand, within HMPREF1058_RS00305 at 7.109 kb on - strand, within HMPREF1058_RS00305 at 7.123 kb on - strand, within HMPREF1058_RS00305 at 7.202 kb on + strand, within HMPREF1058_RS00305 at 7.203 kb on - strand, within HMPREF1058_RS00305 at 7.296 kb on + strand, within HMPREF1058_RS00305 at 7.296 kb on + strand, within HMPREF1058_RS00305 at 7.429 kb on + strand, within HMPREF1058_RS00305 at 7.435 kb on + strand, within HMPREF1058_RS00305 at 7.436 kb on - strand, within HMPREF1058_RS00305 at 7.439 kb on + strand, within HMPREF1058_RS00305 at 7.440 kb on - strand, within HMPREF1058_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 4,693 - -0.5 4,693 - -0.2 4,715 + +2.6 4,750 + -0.3 4,751 - +0.0 4,753 + +0.2 4,754 - +0.9 4,760 + +1.5 4,761 - +2.4 4,850 + HMPREF1058_RS00315 0.19 +1.8 4,869 - HMPREF1058_RS00315 0.22 -0.1 4,883 + HMPREF1058_RS00315 0.24 +2.5 4,883 + HMPREF1058_RS00315 0.24 +0.4 4,883 + HMPREF1058_RS00315 0.24 +0.3 4,994 + HMPREF1058_RS00315 0.42 -0.1 4,994 + HMPREF1058_RS00315 0.42 +0.5 4,994 + HMPREF1058_RS00315 0.42 -0.5 4,995 - HMPREF1058_RS00315 0.42 +0.1 5,012 + HMPREF1058_RS00315 0.44 +0.0 5,012 + HMPREF1058_RS00315 0.44 +0.0 5,061 - HMPREF1058_RS00315 0.52 +0.4 5,108 + HMPREF1058_RS00315 0.59 +1.6 5,110 + HMPREF1058_RS00315 0.60 +0.5 5,110 + HMPREF1058_RS00315 0.60 +0.1 5,110 + HMPREF1058_RS00315 0.60 +1.7 5,111 - HMPREF1058_RS00315 0.60 -0.6 5,111 - HMPREF1058_RS00315 0.60 -1.3 5,122 + HMPREF1058_RS00315 0.62 -0.1 5,144 + HMPREF1058_RS00315 0.65 +0.8 5,190 + HMPREF1058_RS00315 0.72 -0.4 5,191 - HMPREF1058_RS00315 0.72 +1.4 5,191 - HMPREF1058_RS00315 0.72 -0.9 5,196 - HMPREF1058_RS00315 0.73 -0.3 5,208 - HMPREF1058_RS00315 0.75 +1.7 5,209 + HMPREF1058_RS00315 0.75 +0.0 5,259 - HMPREF1058_RS00315 0.83 -0.2 5,285 + HMPREF1058_RS00315 0.87 -0.7 5,299 + HMPREF1058_RS00315 0.89 +0.7 5,305 + -0.2 5,305 + +0.2 5,336 - +0.0 5,431 + +0.4 5,431 + -1.1 5,431 + +2.2 5,434 - -0.4 5,458 - -1.7 5,460 + +0.8 5,463 - -0.1 5,529 + -1.2 5,529 + -1.4 5,562 - HMPREF1058_RS00310 0.12 -1.2 5,651 - HMPREF1058_RS00310 0.20 +0.3 5,655 - HMPREF1058_RS00310 0.21 -1.2 5,690 + HMPREF1058_RS00310 0.24 +1.6 5,691 - HMPREF1058_RS00310 0.24 +0.3 5,691 - HMPREF1058_RS00310 0.24 -3.5 5,691 - HMPREF1058_RS00310 0.24 +1.0 5,695 - HMPREF1058_RS00310 0.25 -1.6 5,733 - HMPREF1058_RS00310 0.29 -3.0 5,769 + HMPREF1058_RS00310 0.32 -1.6 5,814 + HMPREF1058_RS00310 0.36 -1.7 5,840 + HMPREF1058_RS00310 0.39 -1.5 5,840 + HMPREF1058_RS00310 0.39 -1.1 5,840 + HMPREF1058_RS00310 0.39 -2.2 5,928 + HMPREF1058_RS00310 0.48 -1.1 5,929 - HMPREF1058_RS00310 0.48 -1.0 5,933 + HMPREF1058_RS00310 0.48 -0.5 5,934 - HMPREF1058_RS00310 0.48 -0.8 5,981 + HMPREF1058_RS00310 0.53 -1.1 5,982 - HMPREF1058_RS00310 0.53 -2.4 5,982 - HMPREF1058_RS00310 0.53 -0.8 6,159 + HMPREF1058_RS00310 0.70 -0.8 6,328 - HMPREF1058_RS00310 0.87 +0.0 6,368 + -1.6 6,369 - -1.4 6,418 - -1.2 6,420 + -1.9 6,486 - -0.8 6,515 + -0.1 6,550 - -1.0 6,550 - -0.3 6,552 + -2.0 6,554 + -1.6 6,554 + -1.7 6,554 + -1.3 6,559 + -1.9 6,559 + -1.3 6,560 - -0.1 6,560 - -0.6 6,560 - -0.5 6,560 - +0.4 6,562 - -0.5 6,566 + -1.2 6,566 + -2.7 6,567 - +1.0 6,570 + -1.2 6,570 + +0.3 6,571 - -0.6 6,591 + -1.5 6,592 - +0.4 6,593 + -1.9 6,593 + -0.3 6,594 - -0.2 6,594 - -1.5 6,714 + HMPREF1058_RS00305 0.18 +0.5 6,715 - HMPREF1058_RS00305 0.18 -1.0 6,775 + HMPREF1058_RS00305 0.23 -2.1 6,783 + HMPREF1058_RS00305 0.24 -2.8 6,783 + HMPREF1058_RS00305 0.24 -0.2 6,787 + HMPREF1058_RS00305 0.24 -0.4 6,787 + HMPREF1058_RS00305 0.24 -0.2 6,811 + HMPREF1058_RS00305 0.26 -1.9 6,812 - HMPREF1058_RS00305 0.26 -0.4 6,817 + HMPREF1058_RS00305 0.26 -0.1 6,889 - HMPREF1058_RS00305 0.32 -0.3 6,891 - HMPREF1058_RS00305 0.32 +0.5 6,936 - -0.2 6,939 + HMPREF1058_RS00305 0.36 -0.9 6,948 - HMPREF1058_RS00305 0.37 +0.2 6,958 + HMPREF1058_RS00305 0.38 -0.2 7,065 + HMPREF1058_RS00305 0.46 -2.3 7,073 - HMPREF1058_RS00305 0.47 -1.8 7,087 - HMPREF1058_RS00305 0.48 +0.5 7,105 - HMPREF1058_RS00305 0.49 -0.7 7,109 - HMPREF1058_RS00305 0.50 -2.3 7,123 - HMPREF1058_RS00305 0.51 -0.2 7,202 + HMPREF1058_RS00305 0.57 -1.2 7,203 - HMPREF1058_RS00305 0.57 -0.2 7,296 + HMPREF1058_RS00305 0.64 -1.1 7,296 + HMPREF1058_RS00305 0.64 -0.6 7,429 + HMPREF1058_RS00305 0.75 -0.3 7,435 + HMPREF1058_RS00305 0.75 -1.6 7,436 - HMPREF1058_RS00305 0.76 +0.1 7,439 + HMPREF1058_RS00305 0.76 -1.4 7,440 - HMPREF1058_RS00305 0.76 -1.4
Or see this region's nucleotide sequence