Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00210 and HMPREF1058_RS00205 are separated by 165 nucleotides HMPREF1058_RS00205 and HMPREF1058_RS00200 overlap by 14 nucleotides HMPREF1058_RS00200 and HMPREF1058_RS00195 are separated by 2 nucleotides
HMPREF1058_RS00210: HMPREF1058_RS00210 - aspartate-semialdehyde dehydrogenase, at 31,504 to 32,514
_RS00210
HMPREF1058_RS00205: HMPREF1058_RS00205 - cation:proton antiporter, at 32,680 to 34,827
_RS00205
HMPREF1058_RS00200: HMPREF1058_RS00200 - tRNA threonylcarbamoyladenosine dehydratase, at 34,814 to 35,536
_RS00200
HMPREF1058_RS00195: HMPREF1058_RS00195 - ABC transporter ATP-binding protein, at 35,539 to 36,198
_RS00195
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 32.550 kb on - strand at 32.561 kb on - strand at 32.575 kb on - strand at 32.579 kb on - strand at 32.687 kb on + strand at 32.702 kb on + strand at 32.702 kb on + strand at 32.724 kb on + strand at 32.813 kb on + strand at 32.813 kb on + strand at 32.902 kb on + strand, within HMPREF1058_RS00205 at 32.985 kb on + strand, within HMPREF1058_RS00205 at 33.105 kb on + strand, within HMPREF1058_RS00205 at 33.211 kb on + strand, within HMPREF1058_RS00205 at 33.213 kb on + strand at 33.213 kb on + strand, within HMPREF1058_RS00205 at 33.217 kb on + strand, within HMPREF1058_RS00205 at 33.233 kb on + strand, within HMPREF1058_RS00205 at 33.288 kb on + strand at 33.420 kb on + strand at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.662 kb on + strand, within HMPREF1058_RS00205 at 33.759 kb on + strand, within HMPREF1058_RS00205 at 33.759 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.959 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.167 kb on + strand, within HMPREF1058_RS00205 at 34.189 kb on + strand, within HMPREF1058_RS00205 at 34.211 kb on + strand, within HMPREF1058_RS00205 at 34.310 kb on + strand, within HMPREF1058_RS00205 at 34.326 kb on + strand, within HMPREF1058_RS00205 at 34.458 kb on + strand, within HMPREF1058_RS00205 at 34.768 kb on + strand at 34.830 kb on + strand at 34.908 kb on + strand, within HMPREF1058_RS00200 at 35.213 kb on + strand, within HMPREF1058_RS00200 at 35.218 kb on + strand, within HMPREF1058_RS00200 at 35.220 kb on + strand, within HMPREF1058_RS00200 at 35.222 kb on + strand, within HMPREF1058_RS00200 at 35.224 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.401 kb on + strand, within HMPREF1058_RS00200 at 35.480 kb on + strand at 35.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 32,550 - +0.3 32,561 - -1.5 32,575 - -2.2 32,579 - -0.6 32,687 + -1.5 32,702 + -0.9 32,702 + -0.7 32,724 + -1.5 32,813 + +0.2 32,813 + -0.9 32,902 + HMPREF1058_RS00205 0.10 -1.7 32,985 + HMPREF1058_RS00205 0.14 -0.7 33,105 + HMPREF1058_RS00205 0.20 -0.9 33,211 + HMPREF1058_RS00205 0.25 -1.0 33,213 + +0.3 33,213 + HMPREF1058_RS00205 0.25 +0.4 33,217 + HMPREF1058_RS00205 0.25 -2.5 33,233 + HMPREF1058_RS00205 0.26 -0.1 33,288 + -0.4 33,420 + +1.6 33,560 + HMPREF1058_RS00205 0.41 -1.8 33,560 + HMPREF1058_RS00205 0.41 -2.8 33,560 + HMPREF1058_RS00205 0.41 +0.0 33,662 + HMPREF1058_RS00205 0.46 -1.5 33,759 + HMPREF1058_RS00205 0.50 -2.5 33,759 + HMPREF1058_RS00205 0.50 -1.1 33,837 + HMPREF1058_RS00205 0.54 -2.0 33,837 + HMPREF1058_RS00205 0.54 -2.8 33,839 + HMPREF1058_RS00205 0.54 -1.3 33,839 + HMPREF1058_RS00205 0.54 -2.5 33,959 + HMPREF1058_RS00205 0.60 +1.0 34,047 + HMPREF1058_RS00205 0.64 -0.6 34,047 + HMPREF1058_RS00205 0.64 -0.4 34,167 + HMPREF1058_RS00205 0.69 -0.7 34,189 + HMPREF1058_RS00205 0.70 -0.9 34,211 + HMPREF1058_RS00205 0.71 -1.4 34,310 + HMPREF1058_RS00205 0.76 -1.3 34,326 + HMPREF1058_RS00205 0.77 -2.5 34,458 + HMPREF1058_RS00205 0.83 -2.5 34,768 + -2.0 34,830 + +1.3 34,908 + HMPREF1058_RS00200 0.13 -0.1 35,213 + HMPREF1058_RS00200 0.55 +2.0 35,218 + HMPREF1058_RS00200 0.56 +0.6 35,220 + HMPREF1058_RS00200 0.56 -0.5 35,222 + HMPREF1058_RS00200 0.56 +2.6 35,224 + HMPREF1058_RS00200 0.57 +0.5 35,321 + HMPREF1058_RS00200 0.70 -0.0 35,321 + HMPREF1058_RS00200 0.70 +1.9 35,321 + HMPREF1058_RS00200 0.70 -0.6 35,401 + HMPREF1058_RS00200 0.81 -0.6 35,480 + -0.8 35,482 + +0.1
Or see this region's nucleotide sequence