Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19070 and HMPREF1058_RS21380 are separated by 16 nucleotides HMPREF1058_RS21380 and HMPREF1058_RS19065 are separated by 214 nucleotides HMPREF1058_RS19065 and HMPREF1058_RS19060 overlap by 4 nucleotides HMPREF1058_RS19060 and HMPREF1058_RS0119250 are separated by 13 nucleotides HMPREF1058_RS0119250 and HMPREF1058_RS19055 are separated by 75 nucleotides HMPREF1058_RS19055 and HMPREF1058_RS19050 are separated by 6 nucleotides HMPREF1058_RS19050 and HMPREF1058_RS20335 overlap by 11 nucleotides
HMPREF1058_RS19070: HMPREF1058_RS19070 - hypothetical protein, at 27,025 to 27,309
_RS19070
HMPREF1058_RS21380: HMPREF1058_RS21380 - hypothetical protein, at 27,326 to 27,499
_RS21380
HMPREF1058_RS19065: HMPREF1058_RS19065 - helix-turn-helix domain-containing protein, at 27,714 to 28,025
_RS19065
HMPREF1058_RS19060: HMPREF1058_RS19060 - type II toxin-antitoxin system RelE/ParE family toxin, at 28,022 to 28,387
_RS19060
HMPREF1058_RS0119250: HMPREF1058_RS0119250 - hypothetical protein, at 28,401 to 28,688
_RS0119250
HMPREF1058_RS19055: HMPREF1058_RS19055 - hypothetical protein, at 28,764 to 29,039
_RS19055
HMPREF1058_RS19050: HMPREF1058_RS19050 - hypothetical protein, at 29,046 to 29,246
_RS19050
HMPREF1058_RS20335: HMPREF1058_RS20335 - DpnD/PcfM family protein, at 29,236 to 29,412
_RS20335
Position (kb) 28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 27.046 kb on + strand at 27.098 kb on - strand, within HMPREF1058_RS19070 at 27.251 kb on + strand, within HMPREF1058_RS19070 at 27.252 kb on - strand, within HMPREF1058_RS19070 at 27.255 kb on + strand, within HMPREF1058_RS19070 at 27.263 kb on + strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.325 kb on - strand at 27.367 kb on + strand, within HMPREF1058_RS21380 at 27.368 kb on - strand, within HMPREF1058_RS21380 at 27.392 kb on - strand, within HMPREF1058_RS21380 at 27.392 kb on - strand, within HMPREF1058_RS21380 at 27.472 kb on - strand, within HMPREF1058_RS21380 at 27.481 kb on + strand, within HMPREF1058_RS21380 at 27.514 kb on - strand at 27.514 kb on - strand at 27.523 kb on + strand at 27.524 kb on - strand at 27.526 kb on + strand at 27.527 kb on - strand at 27.527 kb on - strand at 28.128 kb on - strand, within HMPREF1058_RS19060 at 28.204 kb on - strand, within HMPREF1058_RS19060 at 28.206 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.232 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.239 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.318 kb on - strand, within HMPREF1058_RS19060 at 28.356 kb on - strand at 28.411 kb on - strand at 28.413 kb on - strand at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.440 kb on - strand, within HMPREF1058_RS0119250 at 28.479 kb on + strand, within HMPREF1058_RS0119250 at 28.532 kb on - strand, within HMPREF1058_RS0119250 at 28.713 kb on - strand at 28.737 kb on + strand at 28.757 kb on + strand at 28.789 kb on + strand at 28.817 kb on - strand, within HMPREF1058_RS19055 at 28.857 kb on - strand, within HMPREF1058_RS19055 at 28.877 kb on - strand, within HMPREF1058_RS19055 at 28.887 kb on - strand, within HMPREF1058_RS19055 at 28.900 kb on + strand, within HMPREF1058_RS19055 at 28.901 kb on - strand, within HMPREF1058_RS19055 at 28.998 kb on + strand, within HMPREF1058_RS19055 at 28.999 kb on - strand, within HMPREF1058_RS19055 at 28.999 kb on - strand at 29.235 kb on - strand at 29.293 kb on - strand, within HMPREF1058_RS20335 at 29.369 kb on - strand, within HMPREF1058_RS20335 at 29.376 kb on + strand, within HMPREF1058_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 27,046 + +2.8 27,098 - HMPREF1058_RS19070 0.26 -2.0 27,251 + HMPREF1058_RS19070 0.79 -0.8 27,252 - HMPREF1058_RS19070 0.80 -0.3 27,255 + HMPREF1058_RS19070 0.81 +1.8 27,263 + HMPREF1058_RS19070 0.84 +0.4 27,264 - HMPREF1058_RS19070 0.84 +0.2 27,264 - HMPREF1058_RS19070 0.84 -1.4 27,264 - HMPREF1058_RS19070 0.84 -1.5 27,325 - -1.7 27,367 + HMPREF1058_RS21380 0.24 +1.0 27,368 - HMPREF1058_RS21380 0.24 -2.1 27,392 - HMPREF1058_RS21380 0.38 -1.2 27,392 - HMPREF1058_RS21380 0.38 -0.9 27,472 - HMPREF1058_RS21380 0.84 -2.0 27,481 + HMPREF1058_RS21380 0.89 +1.6 27,514 - -0.1 27,514 - -1.6 27,523 + -0.5 27,524 - +1.5 27,526 + -2.7 27,527 - +1.8 27,527 - -0.8 28,128 - HMPREF1058_RS19060 0.29 +0.9 28,204 - HMPREF1058_RS19060 0.50 -0.1 28,206 - HMPREF1058_RS19060 0.50 -0.3 28,230 - HMPREF1058_RS19060 0.57 -1.4 28,230 - HMPREF1058_RS19060 0.57 -2.0 28,232 - HMPREF1058_RS19060 0.57 +1.0 28,234 - HMPREF1058_RS19060 0.58 +1.9 28,234 - HMPREF1058_RS19060 0.58 +1.2 28,239 - HMPREF1058_RS19060 0.59 -1.1 28,252 - HMPREF1058_RS19060 0.63 +0.6 28,252 - HMPREF1058_RS19060 0.63 -0.2 28,252 - HMPREF1058_RS19060 0.63 +0.4 28,318 - HMPREF1058_RS19060 0.81 +0.7 28,356 - +1.2 28,411 - -1.3 28,413 - -0.9 28,439 + HMPREF1058_RS0119250 0.13 -1.3 28,439 + HMPREF1058_RS0119250 0.13 -0.7 28,439 + HMPREF1058_RS0119250 0.13 -0.9 28,440 - HMPREF1058_RS0119250 0.14 +2.6 28,479 + HMPREF1058_RS0119250 0.27 +0.8 28,532 - HMPREF1058_RS0119250 0.45 -0.6 28,713 - -0.3 28,737 + +0.0 28,757 + +2.8 28,789 + -1.9 28,817 - HMPREF1058_RS19055 0.19 +0.4 28,857 - HMPREF1058_RS19055 0.34 +1.0 28,877 - HMPREF1058_RS19055 0.41 -0.3 28,887 - HMPREF1058_RS19055 0.45 +0.0 28,900 + HMPREF1058_RS19055 0.49 -0.8 28,901 - HMPREF1058_RS19055 0.50 -1.1 28,998 + HMPREF1058_RS19055 0.85 +0.8 28,999 - HMPREF1058_RS19055 0.85 -0.6 28,999 - +0.0 29,235 - -1.2 29,293 - HMPREF1058_RS20335 0.32 +0.5 29,369 - HMPREF1058_RS20335 0.75 -0.3 29,376 + HMPREF1058_RS20335 0.79 -0.3
Or see this region's nucleotide sequence