Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18810

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20370 and HMPREF1058_RS18810 are separated by 65 nucleotidesHMPREF1058_RS18810 and HMPREF1058_RS18805 overlap by 4 nucleotidesHMPREF1058_RS18805 and HMPREF1058_RS18800 are separated by 87 nucleotides HMPREF1058_RS20370: HMPREF1058_RS20370 - lipoyl(octanoyl) transferase LipB, at 64,377 to 65,465 _RS20370 HMPREF1058_RS18810: HMPREF1058_RS18810 - phosphohydrolase, at 65,531 to 66,232 _RS18810 HMPREF1058_RS18805: HMPREF1058_RS18805 - hypothetical protein, at 66,229 to 66,777 _RS18805 HMPREF1058_RS18800: HMPREF1058_RS18800 - copper-translocating P-type ATPase, at 66,865 to 69,078 _RS18800 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.703 kb on + strandat 64.703 kb on + strand, within HMPREF1058_RS20370at 64.703 kb on + strand, within HMPREF1058_RS20370at 64.703 kb on + strand, within HMPREF1058_RS20370at 64.704 kb on - strand, within HMPREF1058_RS20370at 64.704 kb on - strand, within HMPREF1058_RS20370at 64.745 kb on + strand, within HMPREF1058_RS20370at 64.745 kb on + strand, within HMPREF1058_RS20370at 64.745 kb on + strand, within HMPREF1058_RS20370at 64.777 kb on + strand, within HMPREF1058_RS20370at 64.777 kb on + strand, within HMPREF1058_RS20370at 64.781 kb on + strand, within HMPREF1058_RS20370at 64.782 kb on - strand, within HMPREF1058_RS20370at 64.802 kb on + strand, within HMPREF1058_RS20370at 64.803 kb on - strand, within HMPREF1058_RS20370at 64.853 kb on + strand, within HMPREF1058_RS20370at 64.853 kb on + strand, within HMPREF1058_RS20370at 64.883 kb on + strand, within HMPREF1058_RS20370at 64.883 kb on + strand, within HMPREF1058_RS20370at 64.884 kb on - strand, within HMPREF1058_RS20370at 64.884 kb on - strand, within HMPREF1058_RS20370at 64.885 kb on + strand, within HMPREF1058_RS20370at 64.885 kb on + strand, within HMPREF1058_RS20370at 65.119 kb on + strand, within HMPREF1058_RS20370at 65.138 kb on + strand, within HMPREF1058_RS20370at 65.161 kb on + strand, within HMPREF1058_RS20370at 65.162 kb on - strand, within HMPREF1058_RS20370at 65.166 kb on + strand, within HMPREF1058_RS20370at 65.166 kb on + strand, within HMPREF1058_RS20370at 65.221 kb on - strand, within HMPREF1058_RS20370at 65.221 kb on - strand, within HMPREF1058_RS20370at 65.255 kb on + strand, within HMPREF1058_RS20370at 65.255 kb on + strand, within HMPREF1058_RS20370at 65.284 kb on - strand, within HMPREF1058_RS20370at 65.284 kb on - strand, within HMPREF1058_RS20370at 65.318 kb on + strand, within HMPREF1058_RS20370at 65.318 kb on + strand, within HMPREF1058_RS20370at 65.318 kb on + strand, within HMPREF1058_RS20370at 65.319 kb on - strand, within HMPREF1058_RS20370at 65.363 kb on + strandat 65.365 kb on + strandat 65.390 kb on + strandat 65.445 kb on - strandat 65.450 kb on + strandat 65.451 kb on - strandat 65.461 kb on + strandat 65.462 kb on - strandat 65.468 kb on + strandat 65.496 kb on - strandat 65.530 kb on + strandat 65.531 kb on - strandat 65.573 kb on + strandat 65.628 kb on + strand, within HMPREF1058_RS18810at 65.676 kb on - strand, within HMPREF1058_RS18810at 65.703 kb on - strand, within HMPREF1058_RS18810at 65.707 kb on + strand, within HMPREF1058_RS18810at 65.717 kb on + strand, within HMPREF1058_RS18810at 65.952 kb on + strand, within HMPREF1058_RS18810at 65.952 kb on + strandat 66.000 kb on - strand, within HMPREF1058_RS18810at 66.047 kb on + strand, within HMPREF1058_RS18810at 66.048 kb on - strand, within HMPREF1058_RS18810at 66.199 kb on - strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.221 kb on - strandat 66.228 kb on + strandat 66.228 kb on + strandat 66.306 kb on + strand, within HMPREF1058_RS18805at 66.309 kb on + strand, within HMPREF1058_RS18805at 66.354 kb on + strand, within HMPREF1058_RS18805at 66.416 kb on - strand, within HMPREF1058_RS18805at 66.448 kb on + strand, within HMPREF1058_RS18805at 66.477 kb on + strand, within HMPREF1058_RS18805at 66.484 kb on + strand, within HMPREF1058_RS18805at 66.509 kb on + strand, within HMPREF1058_RS18805at 66.509 kb on + strand, within HMPREF1058_RS18805at 66.541 kb on + strand, within HMPREF1058_RS18805at 66.542 kb on - strand, within HMPREF1058_RS18805at 66.576 kb on - strandat 66.576 kb on - strand, within HMPREF1058_RS18805at 66.608 kb on + strand, within HMPREF1058_RS18805at 66.622 kb on + strand, within HMPREF1058_RS18805at 66.623 kb on - strand, within HMPREF1058_RS18805at 66.631 kb on + strand, within HMPREF1058_RS18805at 66.749 kb on + strandat 66.750 kb on - strandat 66.750 kb on - strandat 66.788 kb on - strandat 66.830 kb on - strandat 66.904 kb on + strandat 66.919 kb on - strandat 66.919 kb on - strandat 66.961 kb on - strandat 66.965 kb on + strandat 66.966 kb on - strandat 66.966 kb on - strandat 67.014 kb on - strandat 67.017 kb on + strandat 67.052 kb on - strandat 67.052 kb on - strandat 67.165 kb on + strand, within HMPREF1058_RS18800at 67.166 kb on - strand, within HMPREF1058_RS18800at 67.211 kb on - strand, within HMPREF1058_RS18800at 67.211 kb on - strand, within HMPREF1058_RS18800at 67.215 kb on + strand, within HMPREF1058_RS18800

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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64,703 + -1.0
64,703 + HMPREF1058_RS20370 0.30 +0.3
64,703 + HMPREF1058_RS20370 0.30 -0.9
64,703 + HMPREF1058_RS20370 0.30 -0.0
64,704 - HMPREF1058_RS20370 0.30 -1.6
64,704 - HMPREF1058_RS20370 0.30 -0.4
64,745 + HMPREF1058_RS20370 0.34 +1.2
64,745 + HMPREF1058_RS20370 0.34 -0.3
64,745 + HMPREF1058_RS20370 0.34 -1.5
64,777 + HMPREF1058_RS20370 0.37 +0.1
64,777 + HMPREF1058_RS20370 0.37 -0.0
64,781 + HMPREF1058_RS20370 0.37 -1.6
64,782 - HMPREF1058_RS20370 0.37 -0.7
64,802 + HMPREF1058_RS20370 0.39 +0.7
64,803 - HMPREF1058_RS20370 0.39 -2.6
64,853 + HMPREF1058_RS20370 0.44 +2.0
64,853 + HMPREF1058_RS20370 0.44 -0.8
64,883 + HMPREF1058_RS20370 0.46 -2.5
64,883 + HMPREF1058_RS20370 0.46 -1.9
64,884 - HMPREF1058_RS20370 0.47 +0.0
64,884 - HMPREF1058_RS20370 0.47 +0.5
64,885 + HMPREF1058_RS20370 0.47 -1.5
64,885 + HMPREF1058_RS20370 0.47 -1.4
65,119 + HMPREF1058_RS20370 0.68 -0.1
65,138 + HMPREF1058_RS20370 0.70 +2.6
65,161 + HMPREF1058_RS20370 0.72 -0.3
65,162 - HMPREF1058_RS20370 0.72 -2.3
65,166 + HMPREF1058_RS20370 0.72 -0.3
65,166 + HMPREF1058_RS20370 0.72 +1.0
65,221 - HMPREF1058_RS20370 0.78 -1.1
65,221 - HMPREF1058_RS20370 0.78 -1.1
65,255 + HMPREF1058_RS20370 0.81 -0.0
65,255 + HMPREF1058_RS20370 0.81 -0.6
65,284 - HMPREF1058_RS20370 0.83 -1.4
65,284 - HMPREF1058_RS20370 0.83 -1.0
65,318 + HMPREF1058_RS20370 0.86 -1.2
65,318 + HMPREF1058_RS20370 0.86 +0.4
65,318 + HMPREF1058_RS20370 0.86 -1.2
65,319 - HMPREF1058_RS20370 0.87 -3.0
65,363 + -2.3
65,365 + -0.4
65,390 + +0.2
65,445 - +0.4
65,450 + -1.3
65,451 - -1.1
65,461 + -0.6
65,462 - -1.5
65,468 + -0.5
65,496 - +2.2
65,530 + +1.1
65,531 - +0.5
65,573 + -1.0
65,628 + HMPREF1058_RS18810 0.14 -0.6
65,676 - HMPREF1058_RS18810 0.21 +0.2
65,703 - HMPREF1058_RS18810 0.25 +1.2
65,707 + HMPREF1058_RS18810 0.25 +1.7
65,717 + HMPREF1058_RS18810 0.26 +2.5
65,952 + HMPREF1058_RS18810 0.60 +1.6
65,952 + -0.4
66,000 - HMPREF1058_RS18810 0.67 +0.5
66,047 + HMPREF1058_RS18810 0.74 +0.5
66,048 - HMPREF1058_RS18810 0.74 -0.8
66,199 - -0.6
66,199 - -2.5
66,199 - -0.4
66,221 - +0.0
66,228 + +0.3
66,228 + -0.3
66,306 + HMPREF1058_RS18805 0.14 -0.7
66,309 + HMPREF1058_RS18805 0.15 -0.6
66,354 + HMPREF1058_RS18805 0.23 +0.2
66,416 - HMPREF1058_RS18805 0.34 +0.0
66,448 + HMPREF1058_RS18805 0.40 -0.2
66,477 + HMPREF1058_RS18805 0.45 -0.6
66,484 + HMPREF1058_RS18805 0.46 +1.2
66,509 + HMPREF1058_RS18805 0.51 -0.5
66,509 + HMPREF1058_RS18805 0.51 -0.0
66,541 + HMPREF1058_RS18805 0.57 +1.2
66,542 - HMPREF1058_RS18805 0.57 -1.1
66,576 - -0.2
66,576 - HMPREF1058_RS18805 0.63 +1.5
66,608 + HMPREF1058_RS18805 0.69 -0.8
66,622 + HMPREF1058_RS18805 0.72 +1.7
66,623 - HMPREF1058_RS18805 0.72 -0.2
66,631 + HMPREF1058_RS18805 0.73 +0.2
66,749 + -0.5
66,750 - -0.5
66,750 - -0.2
66,788 - -0.8
66,830 - -0.1
66,904 + -0.9
66,919 - +0.5
66,919 - -1.5
66,961 - +0.9
66,965 + +1.2
66,966 - +0.7
66,966 - -1.6
67,014 - -0.2
67,017 + +0.0
67,052 - -0.1
67,052 - -1.7
67,165 + HMPREF1058_RS18800 0.14 +0.7
67,166 - HMPREF1058_RS18800 0.14 +1.3
67,211 - HMPREF1058_RS18800 0.16 +0.5
67,211 - HMPREF1058_RS18800 0.16 -0.4
67,215 + HMPREF1058_RS18800 0.16 -1.9

Or see this region's nucleotide sequence