Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18755 and HMPREF1058_RS18750 are separated by 5 nucleotides HMPREF1058_RS18750 and HMPREF1058_RS18745 overlap by 17 nucleotides
HMPREF1058_RS18755: HMPREF1058_RS18755 - hypothetical protein, at 81,190 to 82,413
_RS18755
HMPREF1058_RS18750: HMPREF1058_RS18750 - hypothetical protein, at 82,419 to 83,000
_RS18750
HMPREF1058_RS18745: HMPREF1058_RS18745 - ATP-binding protein, at 82,984 to 86,637
_RS18745
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 81.470 kb on + strand, within HMPREF1058_RS18755 at 81.475 kb on + strand, within HMPREF1058_RS18755 at 81.496 kb on + strand, within HMPREF1058_RS18755 at 81.500 kb on - strand, within HMPREF1058_RS18755 at 81.500 kb on - strand, within HMPREF1058_RS18755 at 81.539 kb on + strand, within HMPREF1058_RS18755 at 81.540 kb on - strand, within HMPREF1058_RS18755 at 81.555 kb on + strand, within HMPREF1058_RS18755 at 81.619 kb on - strand, within HMPREF1058_RS18755 at 81.714 kb on + strand, within HMPREF1058_RS18755 at 82.033 kb on + strand, within HMPREF1058_RS18755 at 82.033 kb on + strand, within HMPREF1058_RS18755 at 82.091 kb on - strand, within HMPREF1058_RS18755 at 82.160 kb on - strand, within HMPREF1058_RS18755 at 82.400 kb on + strand at 82.400 kb on + strand at 82.468 kb on - strand at 82.527 kb on + strand, within HMPREF1058_RS18750 at 82.528 kb on - strand, within HMPREF1058_RS18750 at 82.567 kb on - strand, within HMPREF1058_RS18750 at 82.669 kb on - strand, within HMPREF1058_RS18750 at 82.704 kb on + strand, within HMPREF1058_RS18750 at 82.855 kb on + strand, within HMPREF1058_RS18750 at 82.856 kb on - strand, within HMPREF1058_RS18750 at 82.911 kb on + strand, within HMPREF1058_RS18750 at 82.911 kb on + strand, within HMPREF1058_RS18750 at 82.914 kb on - strand, within HMPREF1058_RS18750 at 82.935 kb on + strand, within HMPREF1058_RS18750 at 82.959 kb on - strand at 83.004 kb on + strand at 83.010 kb on + strand at 83.044 kb on - strand at 83.047 kb on + strand at 83.276 kb on + strand at 83.381 kb on - strand, within HMPREF1058_RS18745 at 83.388 kb on - strand, within HMPREF1058_RS18745 at 83.392 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.407 kb on + strand, within HMPREF1058_RS18745 at 83.413 kb on + strand, within HMPREF1058_RS18745 at 83.414 kb on - strand, within HMPREF1058_RS18745 at 83.517 kb on - strand, within HMPREF1058_RS18745 at 83.856 kb on - strand, within HMPREF1058_RS18745 at 83.984 kb on + strand, within HMPREF1058_RS18745 at 83.984 kb on + strand, within HMPREF1058_RS18745 at 83.985 kb on - strand, within HMPREF1058_RS18745 at 83.985 kb on - strand, within HMPREF1058_RS18745
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 81,470 + HMPREF1058_RS18755 0.23 +0.1 81,475 + HMPREF1058_RS18755 0.23 +2.1 81,496 + HMPREF1058_RS18755 0.25 -2.9 81,500 - HMPREF1058_RS18755 0.25 -0.2 81,500 - HMPREF1058_RS18755 0.25 -1.0 81,539 + HMPREF1058_RS18755 0.29 -0.5 81,540 - HMPREF1058_RS18755 0.29 -0.4 81,555 + HMPREF1058_RS18755 0.30 -1.9 81,619 - HMPREF1058_RS18755 0.35 -3.5 81,714 + HMPREF1058_RS18755 0.43 -0.2 82,033 + HMPREF1058_RS18755 0.69 +0.0 82,033 + HMPREF1058_RS18755 0.69 +0.4 82,091 - HMPREF1058_RS18755 0.74 -3.1 82,160 - HMPREF1058_RS18755 0.79 -0.6 82,400 + +0.5 82,400 + -0.4 82,468 - +1.8 82,527 + HMPREF1058_RS18750 0.19 +1.6 82,528 - HMPREF1058_RS18750 0.19 +1.7 82,567 - HMPREF1058_RS18750 0.25 -1.6 82,669 - HMPREF1058_RS18750 0.43 -0.5 82,704 + HMPREF1058_RS18750 0.49 -1.2 82,855 + HMPREF1058_RS18750 0.75 -0.9 82,856 - HMPREF1058_RS18750 0.75 +0.2 82,911 + HMPREF1058_RS18750 0.85 +0.2 82,911 + HMPREF1058_RS18750 0.85 +2.0 82,914 - HMPREF1058_RS18750 0.85 -1.7 82,935 + HMPREF1058_RS18750 0.89 +0.2 82,959 - -1.9 83,004 + -1.1 83,010 + +2.8 83,044 - -1.1 83,047 + +0.1 83,276 + +0.1 83,381 - HMPREF1058_RS18745 0.11 -1.0 83,388 - HMPREF1058_RS18745 0.11 +0.0 83,392 + HMPREF1058_RS18745 0.11 +0.1 83,407 + HMPREF1058_RS18745 0.12 +2.3 83,407 + HMPREF1058_RS18745 0.12 +0.7 83,407 + HMPREF1058_RS18745 0.12 +0.2 83,413 + HMPREF1058_RS18745 0.12 -0.1 83,414 - HMPREF1058_RS18745 0.12 -1.6 83,517 - HMPREF1058_RS18745 0.15 -0.4 83,856 - HMPREF1058_RS18745 0.24 -0.5 83,984 + HMPREF1058_RS18745 0.27 +3.6 83,984 + HMPREF1058_RS18745 0.27 +0.7 83,985 - HMPREF1058_RS18745 0.27 +0.2 83,985 - HMPREF1058_RS18745 0.27 -1.6
Or see this region's nucleotide sequence