Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18685 and HMPREF1058_RS18680 are separated by 5 nucleotides HMPREF1058_RS18680 and HMPREF1058_RS18675 are separated by 10 nucleotides HMPREF1058_RS18675 and HMPREF1058_RS18670 are separated by 31 nucleotides
HMPREF1058_RS18685: HMPREF1058_RS18685 - F0F1 ATP synthase subunit delta, at 101,729 to 102,286
_RS18685
HMPREF1058_RS18680: HMPREF1058_RS18680 - F0F1 ATP synthase subunit B, at 102,292 to 102,792
_RS18680
HMPREF1058_RS18675: HMPREF1058_RS18675 - ATP synthase F0 subunit C, at 102,803 to 103,057
_RS18675
HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180
_RS18670
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.871 kb on - strand, within HMPREF1058_RS18685 at 101.918 kb on + strand, within HMPREF1058_RS18685 at 101.953 kb on + strand, within HMPREF1058_RS18685 at 101.995 kb on - strand, within HMPREF1058_RS18685 at 101.995 kb on - strand, within HMPREF1058_RS18685 at 102.001 kb on + strand, within HMPREF1058_RS18685 at 102.080 kb on - strand, within HMPREF1058_RS18685 at 102.178 kb on + strand, within HMPREF1058_RS18685 at 102.204 kb on + strand, within HMPREF1058_RS18685 at 102.237 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.278 kb on + strand at 102.279 kb on - strand at 102.279 kb on - strand at 102.279 kb on - strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.282 kb on + strand at 102.283 kb on - strand at 102.283 kb on - strand at 102.286 kb on + strand at 102.403 kb on + strand, within HMPREF1058_RS18680 at 102.404 kb on - strand, within HMPREF1058_RS18680 at 102.409 kb on + strand, within HMPREF1058_RS18680 at 102.409 kb on + strand, within HMPREF1058_RS18680 at 102.613 kb on - strand, within HMPREF1058_RS18680 at 102.616 kb on - strand, within HMPREF1058_RS18680 at 102.661 kb on + strand, within HMPREF1058_RS18680 at 102.662 kb on - strand, within HMPREF1058_RS18680 at 102.663 kb on + strand, within HMPREF1058_RS18680 at 102.663 kb on + strand, within HMPREF1058_RS18680 at 102.665 kb on + strand, within HMPREF1058_RS18680 at 102.666 kb on - strand, within HMPREF1058_RS18680 at 102.781 kb on + strand at 102.784 kb on + strand at 102.795 kb on + strand at 102.795 kb on + strand at 102.807 kb on - strand at 102.874 kb on + strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.875 kb on - strand, within HMPREF1058_RS18675 at 102.881 kb on - strand, within HMPREF1058_RS18675 at 102.982 kb on + strand, within HMPREF1058_RS18675 at 102.983 kb on - strand, within HMPREF1058_RS18675 at 103.004 kb on + strand, within HMPREF1058_RS18675 at 103.005 kb on - strand, within HMPREF1058_RS18675 at 103.058 kb on - strand at 103.060 kb on + strand at 103.160 kb on + strand at 103.160 kb on + strand at 103.164 kb on + strand at 103.164 kb on + strand at 103.165 kb on - strand at 103.165 kb on - strand at 103.168 kb on + strand at 103.169 kb on - strand at 103.208 kb on + strand, within HMPREF1058_RS18670 at 103.275 kb on - strand, within HMPREF1058_RS18670 at 103.325 kb on + strand, within HMPREF1058_RS18670 at 103.491 kb on - strand, within HMPREF1058_RS18670 at 103.523 kb on + strand, within HMPREF1058_RS18670 at 103.529 kb on + strand, within HMPREF1058_RS18670 at 103.530 kb on - strand, within HMPREF1058_RS18670 at 103.625 kb on + strand, within HMPREF1058_RS18670 at 103.626 kb on - strand, within HMPREF1058_RS18670 at 103.628 kb on - strand, within HMPREF1058_RS18670 at 103.676 kb on + strand, within HMPREF1058_RS18670 at 103.722 kb on + strand, within HMPREF1058_RS18670 at 103.761 kb on + strand, within HMPREF1058_RS18670 at 103.762 kb on - strand, within HMPREF1058_RS18670 at 103.762 kb on - strand, within HMPREF1058_RS18670 at 103.812 kb on - strand, within HMPREF1058_RS18670 at 103.812 kb on - strand, within HMPREF1058_RS18670 at 103.869 kb on - strand, within HMPREF1058_RS18670 at 103.897 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.992 kb on - strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.997 kb on + strand, within HMPREF1058_RS18670 at 103.997 kb on + strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.004 kb on - strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.011 kb on - strand, within HMPREF1058_RS18670 at 104.043 kb on + strand, within HMPREF1058_RS18670 at 104.043 kb on + strand at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.046 kb on - strand, within HMPREF1058_RS18670
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 101,871 - HMPREF1058_RS18685 0.25 +0.1 101,918 + HMPREF1058_RS18685 0.34 -0.1 101,953 + HMPREF1058_RS18685 0.40 -1.7 101,995 - HMPREF1058_RS18685 0.48 +1.6 101,995 - HMPREF1058_RS18685 0.48 +0.2 102,001 + HMPREF1058_RS18685 0.49 -1.7 102,080 - HMPREF1058_RS18685 0.63 -1.6 102,178 + HMPREF1058_RS18685 0.80 +0.0 102,204 + HMPREF1058_RS18685 0.85 -1.6 102,237 + +0.6 102,278 + +0.0 102,278 + +0.1 102,278 + -0.4 102,278 + -0.3 102,279 - -2.2 102,279 - +0.9 102,279 - -0.3 102,282 + -1.4 102,282 + -0.8 102,282 + +0.6 102,282 + -2.3 102,283 - +0.6 102,283 - -1.6 102,286 + +1.8 102,403 + HMPREF1058_RS18680 0.22 +0.5 102,404 - HMPREF1058_RS18680 0.22 +0.2 102,409 + HMPREF1058_RS18680 0.23 -0.2 102,409 + HMPREF1058_RS18680 0.23 +0.9 102,613 - HMPREF1058_RS18680 0.64 +2.6 102,616 - HMPREF1058_RS18680 0.65 -1.9 102,661 + HMPREF1058_RS18680 0.74 +0.9 102,662 - HMPREF1058_RS18680 0.74 +0.6 102,663 + HMPREF1058_RS18680 0.74 -0.3 102,663 + HMPREF1058_RS18680 0.74 -1.6 102,665 + HMPREF1058_RS18680 0.74 -2.3 102,666 - HMPREF1058_RS18680 0.75 -0.3 102,781 + -0.2 102,784 + -0.2 102,795 + +0.1 102,795 + +1.1 102,807 - +2.2 102,874 + HMPREF1058_RS18675 0.28 +1.7 102,875 - HMPREF1058_RS18675 0.28 +1.7 102,875 - HMPREF1058_RS18675 0.28 -1.1 102,875 - HMPREF1058_RS18675 0.28 +0.5 102,881 - HMPREF1058_RS18675 0.31 -0.3 102,982 + HMPREF1058_RS18675 0.70 +0.7 102,983 - HMPREF1058_RS18675 0.71 -0.4 103,004 + HMPREF1058_RS18675 0.79 +2.7 103,005 - HMPREF1058_RS18675 0.79 -0.8 103,058 - -0.2 103,060 + -0.1 103,160 + +0.8 103,160 + +1.8 103,164 + +0.4 103,164 + +0.4 103,165 - -0.1 103,165 - +1.0 103,168 + +1.5 103,169 - -2.3 103,208 + HMPREF1058_RS18670 0.11 -0.8 103,275 - HMPREF1058_RS18670 0.17 +1.0 103,325 + HMPREF1058_RS18670 0.22 -1.1 103,491 - HMPREF1058_RS18670 0.37 -0.2 103,523 + HMPREF1058_RS18670 0.40 +1.1 103,529 + HMPREF1058_RS18670 0.40 -0.9 103,530 - HMPREF1058_RS18670 0.40 -0.4 103,625 + HMPREF1058_RS18670 0.49 -0.4 103,626 - HMPREF1058_RS18670 0.49 +0.2 103,628 - HMPREF1058_RS18670 0.49 +1.8 103,676 + HMPREF1058_RS18670 0.54 +0.3 103,722 + HMPREF1058_RS18670 0.58 +1.8 103,761 + HMPREF1058_RS18670 0.62 +0.0 103,762 - HMPREF1058_RS18670 0.62 +0.5 103,762 - HMPREF1058_RS18670 0.62 -0.3 103,812 - HMPREF1058_RS18670 0.66 -2.2 103,812 - HMPREF1058_RS18670 0.66 -2.6 103,869 - HMPREF1058_RS18670 0.71 -0.5 103,897 + HMPREF1058_RS18670 0.74 +0.3 103,991 + HMPREF1058_RS18670 0.83 -0.4 103,991 + HMPREF1058_RS18670 0.83 -0.9 103,992 - HMPREF1058_RS18670 0.83 -0.6 103,995 + HMPREF1058_RS18670 0.83 +0.1 103,995 + HMPREF1058_RS18670 0.83 -1.0 103,996 - HMPREF1058_RS18670 0.83 +0.6 103,996 - HMPREF1058_RS18670 0.83 +0.5 103,997 + HMPREF1058_RS18670 0.83 -0.1 103,997 + HMPREF1058_RS18670 0.83 +0.8 103,998 - HMPREF1058_RS18670 0.83 +0.1 103,998 - HMPREF1058_RS18670 0.83 -0.3 103,998 - HMPREF1058_RS18670 0.83 -0.4 104,003 + HMPREF1058_RS18670 0.84 -2.5 104,003 + HMPREF1058_RS18670 0.84 -0.4 104,004 - HMPREF1058_RS18670 0.84 -0.4 104,010 + HMPREF1058_RS18670 0.84 -0.2 104,010 + HMPREF1058_RS18670 0.84 +1.6 104,011 - HMPREF1058_RS18670 0.84 +0.4 104,043 + HMPREF1058_RS18670 0.87 +1.2 104,043 + +0.2 104,044 - HMPREF1058_RS18670 0.87 -1.0 104,044 - HMPREF1058_RS18670 0.87 +0.6 104,044 - HMPREF1058_RS18670 0.87 -0.2 104,044 - HMPREF1058_RS18670 0.87 +0.4 104,046 - HMPREF1058_RS18670 0.88 +0.6
Or see this region's nucleotide sequence