Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18430 and HMPREF1058_RS18425 are separated by 83 nucleotides HMPREF1058_RS18425 and HMPREF1058_RS18420 are separated by 7 nucleotides HMPREF1058_RS18420 and HMPREF1058_RS18415 are separated by 42 nucleotides
HMPREF1058_RS18430: HMPREF1058_RS18430 - site-specific integrase, at 158,702 to 159,904
_RS18430
HMPREF1058_RS18425: HMPREF1058_RS18425 - ABC-F family ATP-binding cassette domain-containing protein, at 159,988 to 161,853
_RS18425
HMPREF1058_RS18420: HMPREF1058_RS18420 - DUF3805 domain-containing protein, at 161,861 to 162,694
_RS18420
HMPREF1058_RS18415: HMPREF1058_RS18415 - VOC family protein, at 162,737 to 163,114
_RS18415
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.145 kb on + strand, within HMPREF1058_RS18430 at 159.282 kb on - strand, within HMPREF1058_RS18430 at 159.335 kb on + strand, within HMPREF1058_RS18430 at 159.349 kb on - strand, within HMPREF1058_RS18430 at 159.372 kb on + strand, within HMPREF1058_RS18430 at 159.414 kb on + strand, within HMPREF1058_RS18430 at 159.423 kb on + strand, within HMPREF1058_RS18430 at 159.423 kb on + strand, within HMPREF1058_RS18430 at 159.424 kb on - strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.556 kb on + strand, within HMPREF1058_RS18430 at 159.633 kb on + strand, within HMPREF1058_RS18430 at 159.634 kb on - strand, within HMPREF1058_RS18430 at 159.664 kb on + strand, within HMPREF1058_RS18430 at 159.665 kb on - strand, within HMPREF1058_RS18430 at 159.667 kb on + strand, within HMPREF1058_RS18430 at 159.667 kb on + strand, within HMPREF1058_RS18430 at 159.668 kb on - strand, within HMPREF1058_RS18430 at 159.707 kb on + strand, within HMPREF1058_RS18430 at 159.845 kb on + strand at 159.846 kb on - strand at 159.893 kb on - strand at 159.916 kb on - strand at 159.916 kb on - strand at 159.947 kb on - strand at 159.964 kb on + strand at 159.965 kb on - strand at 159.990 kb on - strand at 159.997 kb on + strand at 159.998 kb on - strand at 160.120 kb on + strand at 160.120 kb on + strand at 160.120 kb on + strand at 160.121 kb on - strand at 160.121 kb on - strand at 160.304 kb on + strand, within HMPREF1058_RS18425 at 160.470 kb on + strand, within HMPREF1058_RS18425 at 160.515 kb on + strand, within HMPREF1058_RS18425 at 160.555 kb on - strand, within HMPREF1058_RS18425 at 160.555 kb on - strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.857 kb on - strand, within HMPREF1058_RS18425 at 160.935 kb on - strand, within HMPREF1058_RS18425 at 161.032 kb on - strand, within HMPREF1058_RS18425 at 161.088 kb on + strand, within HMPREF1058_RS18425 at 161.089 kb on - strand, within HMPREF1058_RS18425 at 161.101 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.192 kb on - strand, within HMPREF1058_RS18425 at 161.469 kb on - strand, within HMPREF1058_RS18425 at 161.586 kb on - strand, within HMPREF1058_RS18425 at 161.707 kb on + strand at 161.707 kb on + strand at 161.708 kb on - strand at 161.709 kb on + strand at 161.710 kb on - strand at 161.712 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.722 kb on - strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.842 kb on - strand at 161.844 kb on - strand at 161.844 kb on - strand at 161.863 kb on - strand at 161.998 kb on + strand, within HMPREF1058_RS18420 at 161.999 kb on - strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.147 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.209 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.423 kb on + strand, within HMPREF1058_RS18420 at 162.603 kb on + strand, within HMPREF1058_RS18420 at 162.625 kb on + strand at 162.625 kb on + strand at 162.626 kb on - strand at 162.694 kb on + strand at 162.721 kb on - strand at 162.790 kb on - strand, within HMPREF1058_RS18415
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 159,145 + HMPREF1058_RS18430 0.37 -0.9 159,282 - HMPREF1058_RS18430 0.48 +1.8 159,335 + HMPREF1058_RS18430 0.53 +2.6 159,349 - HMPREF1058_RS18430 0.54 +2.1 159,372 + HMPREF1058_RS18430 0.56 +0.6 159,414 + HMPREF1058_RS18430 0.59 +0.3 159,423 + HMPREF1058_RS18430 0.60 +0.7 159,423 + HMPREF1058_RS18430 0.60 -0.8 159,424 - HMPREF1058_RS18430 0.60 +0.2 159,508 + HMPREF1058_RS18430 0.67 -2.4 159,508 + HMPREF1058_RS18430 0.67 -0.7 159,508 + HMPREF1058_RS18430 0.67 -1.3 159,556 + HMPREF1058_RS18430 0.71 -0.5 159,633 + HMPREF1058_RS18430 0.77 -1.0 159,634 - HMPREF1058_RS18430 0.77 +1.5 159,664 + HMPREF1058_RS18430 0.80 -1.7 159,665 - HMPREF1058_RS18430 0.80 +0.2 159,667 + HMPREF1058_RS18430 0.80 -0.0 159,667 + HMPREF1058_RS18430 0.80 +1.0 159,668 - HMPREF1058_RS18430 0.80 +1.3 159,707 + HMPREF1058_RS18430 0.84 -0.8 159,845 + +0.8 159,846 - +0.5 159,893 - +0.6 159,916 - +2.9 159,916 - +0.9 159,947 - +2.8 159,964 + +0.1 159,965 - -0.2 159,990 - +1.3 159,997 + +2.8 159,998 - +1.0 160,120 + +0.5 160,120 + -0.0 160,120 + +0.9 160,121 - +1.4 160,121 - +0.1 160,304 + HMPREF1058_RS18425 0.17 -0.8 160,470 + HMPREF1058_RS18425 0.26 -0.4 160,515 + HMPREF1058_RS18425 0.28 +0.0 160,555 - HMPREF1058_RS18425 0.30 +1.2 160,555 - HMPREF1058_RS18425 0.30 +0.4 160,562 + HMPREF1058_RS18425 0.31 +0.3 160,562 + HMPREF1058_RS18425 0.31 +0.3 160,562 + HMPREF1058_RS18425 0.31 +1.1 160,563 - HMPREF1058_RS18425 0.31 +0.3 160,563 - HMPREF1058_RS18425 0.31 +0.7 160,563 - HMPREF1058_RS18425 0.31 +1.0 160,563 - HMPREF1058_RS18425 0.31 +1.7 160,567 - HMPREF1058_RS18425 0.31 +1.3 160,567 - HMPREF1058_RS18425 0.31 +1.2 160,567 - HMPREF1058_RS18425 0.31 +0.3 160,857 - HMPREF1058_RS18425 0.47 +2.2 160,935 - HMPREF1058_RS18425 0.51 +3.1 161,032 - HMPREF1058_RS18425 0.56 +1.0 161,088 + HMPREF1058_RS18425 0.59 +0.4 161,089 - HMPREF1058_RS18425 0.59 -2.3 161,101 + HMPREF1058_RS18425 0.60 -1.1 161,150 + HMPREF1058_RS18425 0.62 +1.5 161,150 + HMPREF1058_RS18425 0.62 -0.4 161,168 + HMPREF1058_RS18425 0.63 +1.2 161,168 + HMPREF1058_RS18425 0.63 -0.5 161,192 - HMPREF1058_RS18425 0.65 +1.5 161,469 - HMPREF1058_RS18425 0.79 +0.8 161,586 - HMPREF1058_RS18425 0.86 +0.7 161,707 + +0.5 161,707 + +0.1 161,708 - -1.2 161,709 + -0.4 161,710 - +0.9 161,712 + +0.7 161,716 + +0.8 161,716 + +1.3 161,716 + +1.2 161,722 - +2.2 161,841 + -2.5 161,841 + +2.8 161,841 + +1.3 161,841 + -0.3 161,841 + +0.0 161,842 - +1.2 161,844 - +2.2 161,844 - -0.0 161,863 - -0.6 161,998 + HMPREF1058_RS18420 0.16 +0.2 161,999 - HMPREF1058_RS18420 0.17 +1.0 162,146 + HMPREF1058_RS18420 0.34 +0.3 162,146 + HMPREF1058_RS18420 0.34 -0.9 162,147 - HMPREF1058_RS18420 0.34 +0.4 162,158 - HMPREF1058_RS18420 0.36 -0.3 162,158 - HMPREF1058_RS18420 0.36 +1.7 162,209 - HMPREF1058_RS18420 0.42 -0.7 162,413 - HMPREF1058_RS18420 0.66 +0.5 162,413 - HMPREF1058_RS18420 0.66 +0.0 162,413 - HMPREF1058_RS18420 0.66 +0.2 162,423 + HMPREF1058_RS18420 0.67 +0.6 162,603 + HMPREF1058_RS18420 0.89 -0.1 162,625 + +0.6 162,625 + -0.4 162,626 - +2.0 162,694 + -0.3 162,721 - +0.7 162,790 - HMPREF1058_RS18415 0.14 -0.4
Or see this region's nucleotide sequence