Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18425 and HMPREF1058_RS18420 are separated by 7 nucleotides HMPREF1058_RS18420 and HMPREF1058_RS18415 are separated by 42 nucleotides HMPREF1058_RS18415 and HMPREF1058_RS18410 are separated by 17 nucleotides HMPREF1058_RS18410 and HMPREF1058_RS18405 are separated by 9 nucleotides
HMPREF1058_RS18425: HMPREF1058_RS18425 - ABC-F family ATP-binding cassette domain-containing protein, at 159,988 to 161,853
_RS18425
HMPREF1058_RS18420: HMPREF1058_RS18420 - DUF3805 domain-containing protein, at 161,861 to 162,694
_RS18420
HMPREF1058_RS18415: HMPREF1058_RS18415 - VOC family protein, at 162,737 to 163,114
_RS18415
HMPREF1058_RS18410: HMPREF1058_RS18410 - MBL fold metallo-hydrolase, at 163,132 to 163,923
_RS18410
HMPREF1058_RS18405: HMPREF1058_RS18405 - hypothetical protein, at 163,933 to 165,123
_RS18405
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.842 kb on - strand at 161.844 kb on - strand at 161.844 kb on - strand at 161.863 kb on - strand at 161.998 kb on + strand, within HMPREF1058_RS18420 at 161.999 kb on - strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.147 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.209 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.423 kb on + strand, within HMPREF1058_RS18420 at 162.603 kb on + strand, within HMPREF1058_RS18420 at 162.625 kb on + strand at 162.625 kb on + strand at 162.626 kb on - strand at 162.694 kb on + strand at 162.721 kb on - strand at 162.790 kb on - strand, within HMPREF1058_RS18415 at 162.974 kb on - strand, within HMPREF1058_RS18415 at 162.976 kb on - strand, within HMPREF1058_RS18415 at 163.010 kb on - strand, within HMPREF1058_RS18415 at 163.031 kb on + strand, within HMPREF1058_RS18415 at 163.073 kb on + strand, within HMPREF1058_RS18415 at 163.115 kb on - strand at 163.249 kb on + strand, within HMPREF1058_RS18410 at 163.267 kb on + strand, within HMPREF1058_RS18410 at 163.302 kb on - strand, within HMPREF1058_RS18410 at 163.551 kb on + strand, within HMPREF1058_RS18410 at 163.553 kb on + strand, within HMPREF1058_RS18410 at 163.553 kb on + strand, within HMPREF1058_RS18410 at 163.554 kb on - strand, within HMPREF1058_RS18410 at 163.631 kb on + strand, within HMPREF1058_RS18410 at 163.631 kb on + strand, within HMPREF1058_RS18410 at 163.632 kb on - strand, within HMPREF1058_RS18410 at 163.713 kb on - strand, within HMPREF1058_RS18410 at 163.748 kb on - strand, within HMPREF1058_RS18410 at 163.844 kb on + strand at 163.859 kb on - strand at 163.899 kb on - strand at 163.900 kb on + strand at 163.900 kb on + strand at 163.900 kb on + strand at 163.900 kb on + strand at 163.901 kb on - strand at 163.901 kb on - strand at 163.901 kb on - strand at 163.903 kb on - strand at 163.905 kb on - strand at 163.923 kb on + strand at 163.924 kb on - strand at 163.991 kb on + strand at 164.048 kb on + strand at 164.049 kb on - strand at 164.067 kb on - strand, within HMPREF1058_RS18405 at 164.109 kb on + strand, within HMPREF1058_RS18405 at 164.110 kb on - strand, within HMPREF1058_RS18405
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 161,841 + -2.5 161,841 + +2.8 161,841 + +1.3 161,841 + -0.3 161,841 + +0.0 161,842 - +1.2 161,844 - +2.2 161,844 - -0.0 161,863 - -0.6 161,998 + HMPREF1058_RS18420 0.16 +0.2 161,999 - HMPREF1058_RS18420 0.17 +1.0 162,146 + HMPREF1058_RS18420 0.34 +0.3 162,146 + HMPREF1058_RS18420 0.34 -0.9 162,147 - HMPREF1058_RS18420 0.34 +0.4 162,158 - HMPREF1058_RS18420 0.36 -0.3 162,158 - HMPREF1058_RS18420 0.36 +1.7 162,209 - HMPREF1058_RS18420 0.42 -0.7 162,413 - HMPREF1058_RS18420 0.66 +0.5 162,413 - HMPREF1058_RS18420 0.66 +0.0 162,413 - HMPREF1058_RS18420 0.66 +0.2 162,423 + HMPREF1058_RS18420 0.67 +0.6 162,603 + HMPREF1058_RS18420 0.89 -0.1 162,625 + +0.6 162,625 + -0.4 162,626 - +2.0 162,694 + -0.3 162,721 - +0.7 162,790 - HMPREF1058_RS18415 0.14 -0.4 162,974 - HMPREF1058_RS18415 0.63 -0.4 162,976 - HMPREF1058_RS18415 0.63 +1.3 163,010 - HMPREF1058_RS18415 0.72 +1.3 163,031 + HMPREF1058_RS18415 0.78 -0.1 163,073 + HMPREF1058_RS18415 0.89 +1.4 163,115 - -1.2 163,249 + HMPREF1058_RS18410 0.15 +0.3 163,267 + HMPREF1058_RS18410 0.17 -0.5 163,302 - HMPREF1058_RS18410 0.21 +0.6 163,551 + HMPREF1058_RS18410 0.53 +1.2 163,553 + HMPREF1058_RS18410 0.53 -1.0 163,553 + HMPREF1058_RS18410 0.53 +1.2 163,554 - HMPREF1058_RS18410 0.53 -0.2 163,631 + HMPREF1058_RS18410 0.63 -0.4 163,631 + HMPREF1058_RS18410 0.63 +0.3 163,632 - HMPREF1058_RS18410 0.63 -0.7 163,713 - HMPREF1058_RS18410 0.73 -2.0 163,748 - HMPREF1058_RS18410 0.78 -0.1 163,844 + +0.5 163,859 - +0.8 163,899 - -0.4 163,900 + +1.0 163,900 + +1.1 163,900 + -0.7 163,900 + -0.3 163,901 - -0.7 163,901 - +0.2 163,901 - +1.5 163,903 - +0.6 163,905 - +0.4 163,923 + +0.2 163,924 - +1.8 163,991 + +2.3 164,048 + +1.0 164,049 - +0.2 164,067 - HMPREF1058_RS18405 0.11 -0.6 164,109 + HMPREF1058_RS18405 0.15 +0.9 164,110 - HMPREF1058_RS18405 0.15 -1.0
Or see this region's nucleotide sequence