Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17940

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17950 and HMPREF1058_RS17945 are separated by 12 nucleotidesHMPREF1058_RS17945 and HMPREF1058_RS17940 are separated by 152 nucleotidesHMPREF1058_RS17940 and HMPREF1058_RS17935 are separated by 18 nucleotides HMPREF1058_RS17950: HMPREF1058_RS17950 - biotin synthase BioB, at 293,389 to 294,348 _RS17950 HMPREF1058_RS17945: HMPREF1058_RS17945 - hypothetical protein, at 294,361 to 294,726 _RS17945 HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291 _RS17940 HMPREF1058_RS17935: HMPREF1058_RS17935 - glycosyltransferase, at 296,310 to 297,575 _RS17935 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 293.966 kb on + strand, within HMPREF1058_RS17950at 294.104 kb on + strand, within HMPREF1058_RS17950at 294.248 kb on + strand, within HMPREF1058_RS17950at 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.351 kb on - strandat 294.518 kb on + strand, within HMPREF1058_RS17945at 294.519 kb on - strand, within HMPREF1058_RS17945at 294.630 kb on + strand, within HMPREF1058_RS17945at 294.631 kb on - strand, within HMPREF1058_RS17945at 294.634 kb on + strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.651 kb on + strand, within HMPREF1058_RS17945at 294.652 kb on - strand, within HMPREF1058_RS17945at 294.660 kb on + strand, within HMPREF1058_RS17945at 294.661 kb on - strand, within HMPREF1058_RS17945at 294.666 kb on - strand, within HMPREF1058_RS17945at 294.694 kb on + strandat 294.699 kb on + strandat 294.700 kb on - strandat 294.700 kb on - strandat 294.785 kb on - strandat 294.789 kb on - strandat 294.819 kb on + strandat 294.865 kb on - strandat 294.865 kb on - strandat 294.867 kb on - strandat 294.867 kb on - strandat 294.872 kb on - strandat 295.110 kb on - strand, within HMPREF1058_RS17940at 295.142 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.196 kb on - strand, within HMPREF1058_RS17940at 295.253 kb on + strand, within HMPREF1058_RS17940at 295.327 kb on + strand, within HMPREF1058_RS17940at 295.406 kb on + strand, within HMPREF1058_RS17940at 295.406 kb on + strand, within HMPREF1058_RS17940at 295.475 kb on + strand, within HMPREF1058_RS17940at 295.620 kb on + strand, within HMPREF1058_RS17940at 295.623 kb on - strand, within HMPREF1058_RS17940at 295.624 kb on + strand, within HMPREF1058_RS17940at 295.624 kb on + strand, within HMPREF1058_RS17940at 295.664 kb on + strand, within HMPREF1058_RS17940at 295.799 kb on + strand, within HMPREF1058_RS17940at 295.827 kb on - strand, within HMPREF1058_RS17940at 295.836 kb on - strand, within HMPREF1058_RS17940at 295.891 kb on - strand, within HMPREF1058_RS17940at 296.079 kb on - strand, within HMPREF1058_RS17940at 296.100 kb on - strand, within HMPREF1058_RS17940at 296.147 kb on + strand, within HMPREF1058_RS17940at 296.148 kb on - strand, within HMPREF1058_RS17940at 296.148 kb on - strand, within HMPREF1058_RS17940at 296.150 kb on - strandat 296.200 kb on + strandat 296.201 kb on - strandat 296.207 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.280 kb on + strandat 296.297 kb on - strandat 296.300 kb on + strandat 296.301 kb on - strandat 296.316 kb on - strandat 296.316 kb on - strandat 296.341 kb on + strandat 296.378 kb on + strandat 296.379 kb on - strandat 296.444 kb on + strand, within HMPREF1058_RS17935at 296.444 kb on + strand, within HMPREF1058_RS17935at 296.445 kb on - strand, within HMPREF1058_RS17935at 296.449 kb on + strand, within HMPREF1058_RS17935at 296.450 kb on - strand, within HMPREF1058_RS17935at 296.450 kb on - strand, within HMPREF1058_RS17935at 296.540 kb on + strand, within HMPREF1058_RS17935at 296.613 kb on + strand, within HMPREF1058_RS17935at 296.613 kb on + strand, within HMPREF1058_RS17935at 296.630 kb on - strand, within HMPREF1058_RS17935at 296.800 kb on + strand, within HMPREF1058_RS17935at 296.991 kb on - strand, within HMPREF1058_RS17935at 296.991 kb on - strand, within HMPREF1058_RS17935at 296.994 kb on - strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.032 kb on - strand, within HMPREF1058_RS17935at 297.033 kb on + strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.204 kb on - strand, within HMPREF1058_RS17935at 297.261 kb on - strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.285 kb on - strand, within HMPREF1058_RS17935at 297.285 kb on - strand, within HMPREF1058_RS17935at 297.286 kb on + strand, within HMPREF1058_RS17935

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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293,966 + HMPREF1058_RS17950 0.60 +1.1
294,104 + HMPREF1058_RS17950 0.74 -0.6
294,248 + HMPREF1058_RS17950 0.89 +0.1
294,350 + -0.5
294,350 + -1.6
294,350 + -0.5
294,350 + +0.7
294,351 - -1.9
294,518 + HMPREF1058_RS17945 0.43 -0.9
294,519 - HMPREF1058_RS17945 0.43 -2.6
294,630 + HMPREF1058_RS17945 0.73 -1.0
294,631 - HMPREF1058_RS17945 0.74 -1.1
294,634 + HMPREF1058_RS17945 0.75 -0.1
294,635 - HMPREF1058_RS17945 0.75 -2.1
294,635 - HMPREF1058_RS17945 0.75 -1.4
294,635 - HMPREF1058_RS17945 0.75 -2.8
294,651 + HMPREF1058_RS17945 0.79 -2.1
294,652 - HMPREF1058_RS17945 0.80 -0.9
294,660 + HMPREF1058_RS17945 0.82 -1.5
294,661 - HMPREF1058_RS17945 0.82 -0.0
294,666 - HMPREF1058_RS17945 0.83 -0.5
294,694 + -2.1
294,699 + -2.7
294,700 - -0.1
294,700 - -1.6
294,785 - -1.5
294,789 - +0.2
294,819 + +1.3
294,865 - +0.2
294,865 - +1.4
294,867 - +0.9
294,867 - +0.7
294,872 - +0.1
295,110 - HMPREF1058_RS17940 0.16 +0.7
295,142 + HMPREF1058_RS17940 0.19 -0.2
295,165 + HMPREF1058_RS17940 0.20 +2.9
295,165 + HMPREF1058_RS17940 0.20 +2.0
295,166 - HMPREF1058_RS17940 0.20 +0.2
295,166 - HMPREF1058_RS17940 0.20 +1.4
295,166 - HMPREF1058_RS17940 0.20 -0.2
295,196 - HMPREF1058_RS17940 0.22 +3.7
295,253 + HMPREF1058_RS17940 0.26 -0.9
295,327 + HMPREF1058_RS17940 0.32 +1.1
295,406 + HMPREF1058_RS17940 0.37 +0.4
295,406 + HMPREF1058_RS17940 0.37 +1.1
295,475 + HMPREF1058_RS17940 0.42 -2.0
295,620 + HMPREF1058_RS17940 0.52 -0.6
295,623 - HMPREF1058_RS17940 0.53 +2.2
295,624 + HMPREF1058_RS17940 0.53 -0.8
295,624 + HMPREF1058_RS17940 0.53 +3.0
295,664 + HMPREF1058_RS17940 0.56 +1.4
295,799 + HMPREF1058_RS17940 0.65 -2.1
295,827 - HMPREF1058_RS17940 0.67 +1.0
295,836 - HMPREF1058_RS17940 0.68 +1.0
295,891 - HMPREF1058_RS17940 0.72 +1.1
296,079 - HMPREF1058_RS17940 0.85 -0.4
296,100 - HMPREF1058_RS17940 0.86 -0.4
296,147 + HMPREF1058_RS17940 0.90 -1.6
296,148 - HMPREF1058_RS17940 0.90 -0.1
296,148 - HMPREF1058_RS17940 0.90 +2.5
296,150 - +0.1
296,200 + +1.2
296,201 - +1.4
296,207 - -0.3
296,221 - +1.5
296,221 - +0.6
296,221 - +0.4
296,221 - -0.1
296,280 + +0.4
296,297 - -0.6
296,300 + +1.0
296,301 - +0.8
296,316 - -1.7
296,316 - +0.7
296,341 + +1.1
296,378 + +2.7
296,379 - +3.4
296,444 + HMPREF1058_RS17935 0.11 +1.4
296,444 + HMPREF1058_RS17935 0.11 -1.1
296,445 - HMPREF1058_RS17935 0.11 +1.8
296,449 + HMPREF1058_RS17935 0.11 -1.6
296,450 - HMPREF1058_RS17935 0.11 -2.3
296,450 - HMPREF1058_RS17935 0.11 +2.0
296,540 + HMPREF1058_RS17935 0.18 -0.4
296,613 + HMPREF1058_RS17935 0.24 +0.8
296,613 + HMPREF1058_RS17935 0.24 -1.6
296,630 - HMPREF1058_RS17935 0.25 +0.2
296,800 + HMPREF1058_RS17935 0.39 +0.8
296,991 - HMPREF1058_RS17935 0.54 +1.5
296,991 - HMPREF1058_RS17935 0.54 -0.0
296,994 - HMPREF1058_RS17935 0.54 +0.2
297,031 + HMPREF1058_RS17935 0.57 -1.2
297,031 + HMPREF1058_RS17935 0.57 +0.5
297,031 + HMPREF1058_RS17935 0.57 +1.8
297,031 + HMPREF1058_RS17935 0.57 -1.2
297,032 - HMPREF1058_RS17935 0.57 -0.4
297,033 + HMPREF1058_RS17935 0.57 +2.7
297,034 - HMPREF1058_RS17935 0.57 +1.1
297,034 - HMPREF1058_RS17935 0.57 +2.7
297,034 - HMPREF1058_RS17935 0.57 +2.2
297,204 - HMPREF1058_RS17935 0.71 +0.5
297,261 - HMPREF1058_RS17935 0.75 +0.2
297,284 + HMPREF1058_RS17935 0.77 -1.2
297,284 + HMPREF1058_RS17935 0.77 -0.5
297,284 + HMPREF1058_RS17935 0.77 +1.6
297,285 - HMPREF1058_RS17935 0.77 +0.7
297,285 - HMPREF1058_RS17935 0.77 -0.4
297,286 + HMPREF1058_RS17935 0.77 +3.5

Or see this region's nucleotide sequence