Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17745 and HMPREF1058_RS17740 are separated by 8 nucleotides HMPREF1058_RS17740 and HMPREF1058_RS17735 are separated by 56 nucleotides
HMPREF1058_RS17745: HMPREF1058_RS17745 - hypothetical protein, at 346,995 to 348,335
_RS17745
HMPREF1058_RS17740: HMPREF1058_RS17740 - glycoside hydrolase family 28 protein, at 348,344 to 349,684
_RS17740
HMPREF1058_RS17735: HMPREF1058_RS17735 - family 78 glycoside hydrolase catalytic domain, at 349,741 to 352,494
_RS17735
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 347.544 kb on - strand, within HMPREF1058_RS17745 at 347.554 kb on - strand, within HMPREF1058_RS17745 at 347.675 kb on + strand, within HMPREF1058_RS17745 at 347.751 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.846 kb on - strand, within HMPREF1058_RS17745 at 347.863 kb on - strand, within HMPREF1058_RS17745 at 347.909 kb on + strand, within HMPREF1058_RS17745 at 347.909 kb on + strand, within HMPREF1058_RS17745 at 347.978 kb on + strand, within HMPREF1058_RS17745 at 347.986 kb on + strand, within HMPREF1058_RS17745 at 347.988 kb on + strand, within HMPREF1058_RS17745 at 348.062 kb on + strand, within HMPREF1058_RS17745 at 348.066 kb on + strand, within HMPREF1058_RS17745 at 348.067 kb on - strand, within HMPREF1058_RS17745 at 348.322 kb on - strand at 348.369 kb on + strand at 348.370 kb on - strand at 348.370 kb on - strand at 348.370 kb on - strand at 348.436 kb on - strand at 348.531 kb on + strand, within HMPREF1058_RS17740 at 348.535 kb on + strand, within HMPREF1058_RS17740 at 348.535 kb on + strand, within HMPREF1058_RS17740 at 348.536 kb on - strand, within HMPREF1058_RS17740 at 348.586 kb on + strand, within HMPREF1058_RS17740 at 348.589 kb on - strand, within HMPREF1058_RS17740 at 348.660 kb on - strand, within HMPREF1058_RS17740 at 348.738 kb on - strand, within HMPREF1058_RS17740 at 348.802 kb on + strand, within HMPREF1058_RS17740 at 348.920 kb on + strand, within HMPREF1058_RS17740 at 348.920 kb on + strand, within HMPREF1058_RS17740 at 348.921 kb on - strand, within HMPREF1058_RS17740 at 348.929 kb on - strand, within HMPREF1058_RS17740 at 348.983 kb on - strand, within HMPREF1058_RS17740 at 349.023 kb on - strand, within HMPREF1058_RS17740 at 349.068 kb on - strand, within HMPREF1058_RS17740 at 349.578 kb on - strand at 349.644 kb on - strand at 349.663 kb on + strand at 349.669 kb on + strand at 349.675 kb on + strand at 349.685 kb on + strand at 349.686 kb on - strand at 349.822 kb on + strand at 349.845 kb on + strand at 349.846 kb on - strand at 349.916 kb on + strand at 349.917 kb on + strand at 350.239 kb on + strand, within HMPREF1058_RS17735 at 350.275 kb on - strand, within HMPREF1058_RS17735 at 350.408 kb on + strand, within HMPREF1058_RS17735 at 350.423 kb on + strand, within HMPREF1058_RS17735 at 350.464 kb on + strand, within HMPREF1058_RS17735 at 350.465 kb on - strand, within HMPREF1058_RS17735 at 350.472 kb on + strand, within HMPREF1058_RS17735 at 350.472 kb on + strand, within HMPREF1058_RS17735 at 350.474 kb on + strand, within HMPREF1058_RS17735 at 350.487 kb on + strand, within HMPREF1058_RS17735 at 350.492 kb on - strand, within HMPREF1058_RS17735 at 350.508 kb on + strand, within HMPREF1058_RS17735 at 350.509 kb on - strand, within HMPREF1058_RS17735 at 350.546 kb on + strand, within HMPREF1058_RS17735 at 350.599 kb on - strand, within HMPREF1058_RS17735 at 350.600 kb on + strand, within HMPREF1058_RS17735 at 350.601 kb on - strand, within HMPREF1058_RS17735 at 350.628 kb on - strand, within HMPREF1058_RS17735 at 350.666 kb on + strand, within HMPREF1058_RS17735 at 350.666 kb on + strand, within HMPREF1058_RS17735 at 350.669 kb on + strand, within HMPREF1058_RS17735 at 350.683 kb on + strand, within HMPREF1058_RS17735
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 347,544 - HMPREF1058_RS17745 0.41 -0.1 347,554 - HMPREF1058_RS17745 0.42 +0.3 347,675 + HMPREF1058_RS17745 0.51 -1.2 347,751 - HMPREF1058_RS17745 0.56 -0.6 347,786 - HMPREF1058_RS17745 0.59 -1.1 347,786 - HMPREF1058_RS17745 0.59 +0.9 347,786 - HMPREF1058_RS17745 0.59 -0.6 347,846 - HMPREF1058_RS17745 0.63 +1.7 347,863 - HMPREF1058_RS17745 0.65 -0.2 347,909 + HMPREF1058_RS17745 0.68 -3.8 347,909 + HMPREF1058_RS17745 0.68 -0.6 347,978 + HMPREF1058_RS17745 0.73 -1.4 347,986 + HMPREF1058_RS17745 0.74 -0.2 347,988 + HMPREF1058_RS17745 0.74 +0.6 348,062 + HMPREF1058_RS17745 0.80 +1.3 348,066 + HMPREF1058_RS17745 0.80 -0.0 348,067 - HMPREF1058_RS17745 0.80 -2.0 348,322 - -0.9 348,369 + +0.5 348,370 - +1.3 348,370 - -1.1 348,370 - -0.5 348,436 - +0.5 348,531 + HMPREF1058_RS17740 0.14 +0.0 348,535 + HMPREF1058_RS17740 0.14 -0.5 348,535 + HMPREF1058_RS17740 0.14 +1.9 348,536 - HMPREF1058_RS17740 0.14 -0.2 348,586 + HMPREF1058_RS17740 0.18 +1.0 348,589 - HMPREF1058_RS17740 0.18 -0.7 348,660 - HMPREF1058_RS17740 0.24 -1.2 348,738 - HMPREF1058_RS17740 0.29 +0.6 348,802 + HMPREF1058_RS17740 0.34 -1.1 348,920 + HMPREF1058_RS17740 0.43 +2.4 348,920 + HMPREF1058_RS17740 0.43 -2.0 348,921 - HMPREF1058_RS17740 0.43 -1.8 348,929 - HMPREF1058_RS17740 0.44 +0.1 348,983 - HMPREF1058_RS17740 0.48 -3.6 349,023 - HMPREF1058_RS17740 0.51 +0.4 349,068 - HMPREF1058_RS17740 0.54 -1.0 349,578 - -1.7 349,644 - -0.8 349,663 + -0.2 349,669 + -0.8 349,675 + +0.1 349,685 + -0.4 349,686 - -1.5 349,822 + -2.0 349,845 + -0.3 349,846 - +0.7 349,916 + -2.5 349,917 + +1.3 350,239 + HMPREF1058_RS17735 0.18 -1.5 350,275 - HMPREF1058_RS17735 0.19 -0.5 350,408 + HMPREF1058_RS17735 0.24 -2.3 350,423 + HMPREF1058_RS17735 0.25 +2.2 350,464 + HMPREF1058_RS17735 0.26 -1.0 350,465 - HMPREF1058_RS17735 0.26 -0.3 350,472 + HMPREF1058_RS17735 0.27 -0.6 350,472 + HMPREF1058_RS17735 0.27 +0.7 350,474 + HMPREF1058_RS17735 0.27 -0.2 350,487 + HMPREF1058_RS17735 0.27 +0.3 350,492 - HMPREF1058_RS17735 0.27 +0.5 350,508 + HMPREF1058_RS17735 0.28 -0.0 350,509 - HMPREF1058_RS17735 0.28 -2.6 350,546 + HMPREF1058_RS17735 0.29 +0.4 350,599 - HMPREF1058_RS17735 0.31 -1.1 350,600 + HMPREF1058_RS17735 0.31 +0.1 350,601 - HMPREF1058_RS17735 0.31 +0.7 350,628 - HMPREF1058_RS17735 0.32 -1.0 350,666 + HMPREF1058_RS17735 0.34 +0.3 350,666 + HMPREF1058_RS17735 0.34 +0.7 350,669 + HMPREF1058_RS17735 0.34 -1.9 350,683 + HMPREF1058_RS17735 0.34 -2.3
Or see this region's nucleotide sequence