Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17335 and HMPREF1058_RS17330 are separated by 132 nucleotides HMPREF1058_RS17330 and HMPREF1058_RS17325 are separated by 1 nucleotides HMPREF1058_RS17325 and HMPREF1058_RS17320 are separated by 3 nucleotides HMPREF1058_RS17320 and HMPREF1058_RS17315 are separated by 10 nucleotides
HMPREF1058_RS17335: HMPREF1058_RS17335 - hydroxymethylglutaryl-CoA lyase, at 467,008 to 468,534
_RS17335
HMPREF1058_RS17330: HMPREF1058_RS17330 - acylneuraminate cytidylyltransferase family protein, at 468,667 to 469,353
_RS17330
HMPREF1058_RS17325: HMPREF1058_RS17325 - sugar kinase, at 469,355 to 470,392
_RS17325
HMPREF1058_RS17320: HMPREF1058_RS17320 - hypothetical protein, at 470,396 to 471,175
_RS17320
HMPREF1058_RS17315: HMPREF1058_RS17315 - acyltransferase family protein, at 471,186 to 472,220
_RS17315
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 468.367 kb on + strand, within HMPREF1058_RS17335 at 468.376 kb on + strand, within HMPREF1058_RS17335 at 468.377 kb on - strand, within HMPREF1058_RS17335 at 468.377 kb on - strand, within HMPREF1058_RS17335 at 468.378 kb on + strand, within HMPREF1058_RS17335 at 468.379 kb on - strand, within HMPREF1058_RS17335 at 468.445 kb on + strand at 468.446 kb on + strand at 468.491 kb on + strand at 468.493 kb on + strand at 468.494 kb on - strand at 468.506 kb on + strand at 468.612 kb on - strand at 468.732 kb on + strand at 468.876 kb on + strand, within HMPREF1058_RS17330 at 468.947 kb on - strand, within HMPREF1058_RS17330 at 468.996 kb on + strand, within HMPREF1058_RS17330 at 469.020 kb on - strand, within HMPREF1058_RS17330 at 469.020 kb on - strand, within HMPREF1058_RS17330 at 469.022 kb on - strand, within HMPREF1058_RS17330 at 469.027 kb on - strand, within HMPREF1058_RS17330 at 469.027 kb on - strand, within HMPREF1058_RS17330 at 469.034 kb on + strand, within HMPREF1058_RS17330 at 469.034 kb on + strand, within HMPREF1058_RS17330 at 469.042 kb on + strand, within HMPREF1058_RS17330 at 469.095 kb on - strand, within HMPREF1058_RS17330 at 469.107 kb on - strand, within HMPREF1058_RS17330 at 469.137 kb on + strand, within HMPREF1058_RS17330 at 469.148 kb on + strand, within HMPREF1058_RS17330 at 469.149 kb on - strand, within HMPREF1058_RS17330 at 469.200 kb on + strand, within HMPREF1058_RS17330 at 469.200 kb on + strand, within HMPREF1058_RS17330 at 469.201 kb on - strand at 469.225 kb on + strand, within HMPREF1058_RS17330 at 469.265 kb on + strand, within HMPREF1058_RS17330 at 469.268 kb on - strand, within HMPREF1058_RS17330 at 469.271 kb on + strand, within HMPREF1058_RS17330 at 469.318 kb on - strand at 469.336 kb on + strand at 469.337 kb on - strand at 469.430 kb on - strand at 469.440 kb on + strand at 469.440 kb on + strand at 469.441 kb on - strand at 469.441 kb on - strand at 469.441 kb on - strand at 469.488 kb on - strand, within HMPREF1058_RS17325 at 469.505 kb on + strand, within HMPREF1058_RS17325 at 469.506 kb on - strand, within HMPREF1058_RS17325 at 469.507 kb on + strand, within HMPREF1058_RS17325 at 469.511 kb on - strand, within HMPREF1058_RS17325 at 469.531 kb on + strand at 469.692 kb on + strand, within HMPREF1058_RS17325 at 469.709 kb on - strand, within HMPREF1058_RS17325 at 469.736 kb on - strand, within HMPREF1058_RS17325 at 469.830 kb on + strand, within HMPREF1058_RS17325 at 469.849 kb on + strand, within HMPREF1058_RS17325 at 469.850 kb on - strand, within HMPREF1058_RS17325 at 470.084 kb on - strand, within HMPREF1058_RS17325 at 470.114 kb on - strand, within HMPREF1058_RS17325 at 470.116 kb on + strand, within HMPREF1058_RS17325 at 470.136 kb on - strand, within HMPREF1058_RS17325 at 470.151 kb on + strand, within HMPREF1058_RS17325 at 470.153 kb on + strand, within HMPREF1058_RS17325 at 470.165 kb on - strand, within HMPREF1058_RS17325 at 470.170 kb on + strand, within HMPREF1058_RS17325 at 470.171 kb on - strand, within HMPREF1058_RS17325 at 470.173 kb on + strand, within HMPREF1058_RS17325 at 470.174 kb on - strand, within HMPREF1058_RS17325 at 470.177 kb on - strand, within HMPREF1058_RS17325 at 470.187 kb on + strand, within HMPREF1058_RS17325 at 470.191 kb on + strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.230 kb on - strand, within HMPREF1058_RS17325 at 470.232 kb on - strand, within HMPREF1058_RS17325 at 470.305 kb on + strand at 470.321 kb on + strand at 470.332 kb on - strand at 470.332 kb on - strand at 470.368 kb on + strand at 470.551 kb on + strand, within HMPREF1058_RS17320 at 470.551 kb on + strand, within HMPREF1058_RS17320 at 470.551 kb on + strand, within HMPREF1058_RS17320 at 470.552 kb on - strand, within HMPREF1058_RS17320 at 470.553 kb on + strand, within HMPREF1058_RS17320 at 470.554 kb on - strand, within HMPREF1058_RS17320 at 470.559 kb on + strand, within HMPREF1058_RS17320 at 470.575 kb on - strand, within HMPREF1058_RS17320 at 470.614 kb on + strand, within HMPREF1058_RS17320 at 470.645 kb on - strand, within HMPREF1058_RS17320 at 470.670 kb on - strand, within HMPREF1058_RS17320 at 470.670 kb on - strand at 470.677 kb on - strand, within HMPREF1058_RS17320 at 470.698 kb on + strand, within HMPREF1058_RS17320 at 470.761 kb on - strand, within HMPREF1058_RS17320 at 470.764 kb on - strand, within HMPREF1058_RS17320 at 470.786 kb on - strand, within HMPREF1058_RS17320 at 470.816 kb on - strand, within HMPREF1058_RS17320 at 470.820 kb on - strand, within HMPREF1058_RS17320 at 470.820 kb on - strand, within HMPREF1058_RS17320 at 470.906 kb on - strand, within HMPREF1058_RS17320 at 470.908 kb on - strand, within HMPREF1058_RS17320 at 470.937 kb on + strand, within HMPREF1058_RS17320 at 471.025 kb on - strand, within HMPREF1058_RS17320 at 471.103 kb on - strand at 471.103 kb on - strand at 471.283 kb on - strand at 471.287 kb on + strand at 471.343 kb on + strand, within HMPREF1058_RS17315 at 471.378 kb on + strand, within HMPREF1058_RS17315 at 471.379 kb on - strand, within HMPREF1058_RS17315 at 471.385 kb on + strand, within HMPREF1058_RS17315
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 468,367 + HMPREF1058_RS17335 0.89 +1.7 468,376 + HMPREF1058_RS17335 0.90 -0.3 468,377 - HMPREF1058_RS17335 0.90 +1.1 468,377 - HMPREF1058_RS17335 0.90 -1.0 468,378 + HMPREF1058_RS17335 0.90 +1.1 468,379 - HMPREF1058_RS17335 0.90 -0.3 468,445 + +0.3 468,446 + -0.3 468,491 + +0.9 468,493 + +1.3 468,494 - +1.0 468,506 + +2.7 468,612 - -0.2 468,732 + -0.9 468,876 + HMPREF1058_RS17330 0.30 +0.4 468,947 - HMPREF1058_RS17330 0.41 +0.3 468,996 + HMPREF1058_RS17330 0.48 -1.8 469,020 - HMPREF1058_RS17330 0.51 -1.2 469,020 - HMPREF1058_RS17330 0.51 -0.8 469,022 - HMPREF1058_RS17330 0.52 -1.4 469,027 - HMPREF1058_RS17330 0.52 +3.1 469,027 - HMPREF1058_RS17330 0.52 -0.5 469,034 + HMPREF1058_RS17330 0.53 -0.6 469,034 + HMPREF1058_RS17330 0.53 -0.4 469,042 + HMPREF1058_RS17330 0.55 -1.7 469,095 - HMPREF1058_RS17330 0.62 -0.3 469,107 - HMPREF1058_RS17330 0.64 -0.2 469,137 + HMPREF1058_RS17330 0.68 -0.3 469,148 + HMPREF1058_RS17330 0.70 +1.5 469,149 - HMPREF1058_RS17330 0.70 +1.5 469,200 + HMPREF1058_RS17330 0.78 +1.1 469,200 + HMPREF1058_RS17330 0.78 -0.7 469,201 - -0.5 469,225 + HMPREF1058_RS17330 0.81 -1.1 469,265 + HMPREF1058_RS17330 0.87 +1.3 469,268 - HMPREF1058_RS17330 0.87 -0.5 469,271 + HMPREF1058_RS17330 0.88 -0.1 469,318 - -0.8 469,336 + +0.7 469,337 - -2.1 469,430 - +0.6 469,440 + +0.9 469,440 + +0.1 469,441 - -1.4 469,441 - -0.7 469,441 - +0.5 469,488 - HMPREF1058_RS17325 0.13 +0.5 469,505 + HMPREF1058_RS17325 0.14 +1.1 469,506 - HMPREF1058_RS17325 0.15 +0.7 469,507 + HMPREF1058_RS17325 0.15 -1.3 469,511 - HMPREF1058_RS17325 0.15 +2.6 469,531 + +1.1 469,692 + HMPREF1058_RS17325 0.32 -0.0 469,709 - HMPREF1058_RS17325 0.34 -0.1 469,736 - HMPREF1058_RS17325 0.37 -1.0 469,830 + HMPREF1058_RS17325 0.46 -0.8 469,849 + HMPREF1058_RS17325 0.48 -0.4 469,850 - HMPREF1058_RS17325 0.48 +0.9 470,084 - HMPREF1058_RS17325 0.70 -0.8 470,114 - HMPREF1058_RS17325 0.73 +2.7 470,116 + HMPREF1058_RS17325 0.73 -0.0 470,136 - HMPREF1058_RS17325 0.75 -0.8 470,151 + HMPREF1058_RS17325 0.77 +0.9 470,153 + HMPREF1058_RS17325 0.77 -0.8 470,165 - HMPREF1058_RS17325 0.78 -0.3 470,170 + HMPREF1058_RS17325 0.79 -2.1 470,171 - HMPREF1058_RS17325 0.79 -2.7 470,173 + HMPREF1058_RS17325 0.79 -1.3 470,174 - HMPREF1058_RS17325 0.79 -1.5 470,177 - HMPREF1058_RS17325 0.79 -0.6 470,187 + HMPREF1058_RS17325 0.80 -0.7 470,191 + HMPREF1058_RS17325 0.81 -0.3 470,230 - HMPREF1058_RS17325 0.84 +1.0 470,230 - HMPREF1058_RS17325 0.84 -1.4 470,230 - HMPREF1058_RS17325 0.84 +0.9 470,230 - HMPREF1058_RS17325 0.84 -0.7 470,230 - HMPREF1058_RS17325 0.84 +0.2 470,230 - HMPREF1058_RS17325 0.84 +0.1 470,232 - HMPREF1058_RS17325 0.84 +0.3 470,305 + +0.6 470,321 + -0.8 470,332 - -0.5 470,332 - -0.9 470,368 + -1.6 470,551 + HMPREF1058_RS17320 0.20 +0.4 470,551 + HMPREF1058_RS17320 0.20 -2.0 470,551 + HMPREF1058_RS17320 0.20 -1.6 470,552 - HMPREF1058_RS17320 0.20 -1.1 470,553 + HMPREF1058_RS17320 0.20 -0.8 470,554 - HMPREF1058_RS17320 0.20 +0.5 470,559 + HMPREF1058_RS17320 0.21 +0.0 470,575 - HMPREF1058_RS17320 0.23 +1.6 470,614 + HMPREF1058_RS17320 0.28 -1.1 470,645 - HMPREF1058_RS17320 0.32 +0.9 470,670 - HMPREF1058_RS17320 0.35 -0.3 470,670 - +1.2 470,677 - HMPREF1058_RS17320 0.36 -1.6 470,698 + HMPREF1058_RS17320 0.39 -0.2 470,761 - HMPREF1058_RS17320 0.47 -0.0 470,764 - HMPREF1058_RS17320 0.47 +0.3 470,786 - HMPREF1058_RS17320 0.50 -2.4 470,816 - HMPREF1058_RS17320 0.54 -1.3 470,820 - HMPREF1058_RS17320 0.54 +1.7 470,820 - HMPREF1058_RS17320 0.54 -1.3 470,906 - HMPREF1058_RS17320 0.65 +1.7 470,908 - HMPREF1058_RS17320 0.66 -2.3 470,937 + HMPREF1058_RS17320 0.69 +0.5 471,025 - HMPREF1058_RS17320 0.81 -0.4 471,103 - -0.1 471,103 - -0.4 471,283 - -2.0 471,287 + -1.0 471,343 + HMPREF1058_RS17315 0.15 -0.2 471,378 + HMPREF1058_RS17315 0.19 +0.3 471,379 - HMPREF1058_RS17315 0.19 +1.5 471,385 + HMPREF1058_RS17315 0.19 -0.1
Or see this region's nucleotide sequence