Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17235

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17240 and HMPREF1058_RS17235 are separated by 150 nucleotidesHMPREF1058_RS17235 and HMPREF1058_RS17230 are separated by 48 nucleotides HMPREF1058_RS17240: HMPREF1058_RS17240 - DUF4038 domain-containing protein, at 491,999 to 493,468 _RS17240 HMPREF1058_RS17235: HMPREF1058_RS17235 - glycoside hydrolase family 88 protein, at 493,619 to 494,818 _RS17235 HMPREF1058_RS17230: HMPREF1058_RS17230 - glycoside hydrolase family 95 protein, at 494,867 to 497,311 _RS17230 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 492.619 kb on + strand, within HMPREF1058_RS17240at 492.815 kb on - strand, within HMPREF1058_RS17240at 492.815 kb on - strand, within HMPREF1058_RS17240at 492.899 kb on - strand, within HMPREF1058_RS17240at 492.901 kb on + strand, within HMPREF1058_RS17240at 492.923 kb on + strand, within HMPREF1058_RS17240at 492.923 kb on + strand, within HMPREF1058_RS17240at 492.935 kb on - strand, within HMPREF1058_RS17240at 493.038 kb on - strand, within HMPREF1058_RS17240at 493.046 kb on + strand, within HMPREF1058_RS17240at 493.048 kb on + strand, within HMPREF1058_RS17240at 493.050 kb on + strand, within HMPREF1058_RS17240at 493.050 kb on + strand, within HMPREF1058_RS17240at 493.051 kb on - strand, within HMPREF1058_RS17240at 493.051 kb on - strand, within HMPREF1058_RS17240at 493.051 kb on - strand, within HMPREF1058_RS17240at 493.081 kb on + strand, within HMPREF1058_RS17240at 493.082 kb on - strand, within HMPREF1058_RS17240at 493.082 kb on - strand, within HMPREF1058_RS17240at 493.083 kb on + strand, within HMPREF1058_RS17240at 493.084 kb on - strand, within HMPREF1058_RS17240at 493.107 kb on + strand, within HMPREF1058_RS17240at 493.139 kb on - strand, within HMPREF1058_RS17240at 493.159 kb on - strand, within HMPREF1058_RS17240at 493.168 kb on - strand, within HMPREF1058_RS17240at 493.172 kb on - strand, within HMPREF1058_RS17240at 493.216 kb on + strand, within HMPREF1058_RS17240at 493.217 kb on - strand, within HMPREF1058_RS17240at 493.237 kb on + strand, within HMPREF1058_RS17240at 493.245 kb on + strand, within HMPREF1058_RS17240at 493.248 kb on + strand, within HMPREF1058_RS17240at 493.248 kb on + strand, within HMPREF1058_RS17240at 493.249 kb on - strand, within HMPREF1058_RS17240at 493.385 kb on - strandat 493.386 kb on + strandat 493.387 kb on - strandat 493.427 kb on + strandat 493.474 kb on + strandat 493.493 kb on + strandat 493.645 kb on + strandat 493.703 kb on + strandat 493.704 kb on - strandat 493.704 kb on - strandat 493.704 kb on - strandat 493.708 kb on - strandat 493.708 kb on - strandat 493.711 kb on - strandat 493.771 kb on + strand, within HMPREF1058_RS17235at 493.774 kb on + strand, within HMPREF1058_RS17235at 493.815 kb on - strand, within HMPREF1058_RS17235at 494.017 kb on + strand, within HMPREF1058_RS17235at 494.021 kb on + strand, within HMPREF1058_RS17235at 494.066 kb on - strand, within HMPREF1058_RS17235at 494.067 kb on + strand, within HMPREF1058_RS17235at 494.068 kb on - strand, within HMPREF1058_RS17235at 494.105 kb on + strand, within HMPREF1058_RS17235at 494.147 kb on - strand, within HMPREF1058_RS17235at 494.187 kb on + strand, within HMPREF1058_RS17235at 494.188 kb on - strand, within HMPREF1058_RS17235at 494.235 kb on - strand, within HMPREF1058_RS17235at 494.263 kb on + strand, within HMPREF1058_RS17235at 494.264 kb on - strand, within HMPREF1058_RS17235at 494.277 kb on - strandat 494.315 kb on + strand, within HMPREF1058_RS17235at 494.316 kb on - strand, within HMPREF1058_RS17235at 494.482 kb on + strand, within HMPREF1058_RS17235at 494.482 kb on + strand, within HMPREF1058_RS17235at 494.483 kb on - strand, within HMPREF1058_RS17235at 494.556 kb on - strand, within HMPREF1058_RS17235at 494.569 kb on + strand, within HMPREF1058_RS17235at 494.569 kb on + strand, within HMPREF1058_RS17235at 494.570 kb on - strand, within HMPREF1058_RS17235at 494.572 kb on - strand, within HMPREF1058_RS17235at 494.756 kb on - strandat 494.794 kb on + strandat 494.818 kb on + strandat 494.832 kb on - strandat 494.872 kb on + strandat 494.873 kb on - strandat 494.882 kb on + strandat 494.883 kb on - strandat 494.885 kb on - strandat 494.885 kb on - strandat 494.998 kb on - strandat 494.998 kb on - strandat 495.158 kb on + strand, within HMPREF1058_RS17230at 495.159 kb on - strand, within HMPREF1058_RS17230at 495.217 kb on + strand, within HMPREF1058_RS17230at 495.262 kb on + strand, within HMPREF1058_RS17230at 495.263 kb on - strand, within HMPREF1058_RS17230at 495.376 kb on + strand, within HMPREF1058_RS17230at 495.379 kb on - strand, within HMPREF1058_RS17230at 495.416 kb on + strand, within HMPREF1058_RS17230at 495.416 kb on + strand, within HMPREF1058_RS17230at 495.417 kb on - strand, within HMPREF1058_RS17230at 495.472 kb on + strand, within HMPREF1058_RS17230at 495.472 kb on + strand, within HMPREF1058_RS17230at 495.537 kb on + strand, within HMPREF1058_RS17230at 495.537 kb on + strand, within HMPREF1058_RS17230at 495.745 kb on + strand, within HMPREF1058_RS17230at 495.746 kb on - strand, within HMPREF1058_RS17230at 495.760 kb on + strand, within HMPREF1058_RS17230

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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492,619 + HMPREF1058_RS17240 0.42 +0.8
492,815 - HMPREF1058_RS17240 0.56 +0.2
492,815 - HMPREF1058_RS17240 0.56 -1.7
492,899 - HMPREF1058_RS17240 0.61 -1.6
492,901 + HMPREF1058_RS17240 0.61 -0.3
492,923 + HMPREF1058_RS17240 0.63 -0.4
492,923 + HMPREF1058_RS17240 0.63 -0.8
492,935 - HMPREF1058_RS17240 0.64 -1.0
493,038 - HMPREF1058_RS17240 0.71 -0.6
493,046 + HMPREF1058_RS17240 0.71 -1.3
493,048 + HMPREF1058_RS17240 0.71 -0.5
493,050 + HMPREF1058_RS17240 0.71 +0.0
493,050 + HMPREF1058_RS17240 0.71 +0.6
493,051 - HMPREF1058_RS17240 0.72 +0.5
493,051 - HMPREF1058_RS17240 0.72 -0.3
493,051 - HMPREF1058_RS17240 0.72 -1.4
493,081 + HMPREF1058_RS17240 0.74 +0.3
493,082 - HMPREF1058_RS17240 0.74 +0.4
493,082 - HMPREF1058_RS17240 0.74 -0.7
493,083 + HMPREF1058_RS17240 0.74 +0.0
493,084 - HMPREF1058_RS17240 0.74 -1.7
493,107 + HMPREF1058_RS17240 0.75 -0.5
493,139 - HMPREF1058_RS17240 0.78 -2.8
493,159 - HMPREF1058_RS17240 0.79 -3.0
493,168 - HMPREF1058_RS17240 0.80 -1.1
493,172 - HMPREF1058_RS17240 0.80 +0.6
493,216 + HMPREF1058_RS17240 0.83 -1.2
493,217 - HMPREF1058_RS17240 0.83 +0.3
493,237 + HMPREF1058_RS17240 0.84 -2.0
493,245 + HMPREF1058_RS17240 0.85 +1.0
493,248 + HMPREF1058_RS17240 0.85 +1.0
493,248 + HMPREF1058_RS17240 0.85 -0.0
493,249 - HMPREF1058_RS17240 0.85 +0.1
493,385 - -0.8
493,386 + +0.3
493,387 - -1.6
493,427 + -2.0
493,474 + -0.4
493,493 + +1.0
493,645 + +0.6
493,703 + -1.0
493,704 - -1.2
493,704 - -1.8
493,704 - -0.6
493,708 - -0.6
493,708 - +1.6
493,711 - -0.7
493,771 + HMPREF1058_RS17235 0.13 +0.5
493,774 + HMPREF1058_RS17235 0.13 -1.5
493,815 - HMPREF1058_RS17235 0.16 -0.6
494,017 + HMPREF1058_RS17235 0.33 -0.4
494,021 + HMPREF1058_RS17235 0.34 +0.8
494,066 - HMPREF1058_RS17235 0.37 -1.2
494,067 + HMPREF1058_RS17235 0.37 -1.1
494,068 - HMPREF1058_RS17235 0.37 +0.3
494,105 + HMPREF1058_RS17235 0.41 -0.3
494,147 - HMPREF1058_RS17235 0.44 -1.5
494,187 + HMPREF1058_RS17235 0.47 -1.3
494,188 - HMPREF1058_RS17235 0.47 -1.1
494,235 - HMPREF1058_RS17235 0.51 -0.6
494,263 + HMPREF1058_RS17235 0.54 +0.8
494,264 - HMPREF1058_RS17235 0.54 -0.6
494,277 - +0.0
494,315 + HMPREF1058_RS17235 0.58 +0.5
494,316 - HMPREF1058_RS17235 0.58 +1.2
494,482 + HMPREF1058_RS17235 0.72 -0.3
494,482 + HMPREF1058_RS17235 0.72 -2.1
494,483 - HMPREF1058_RS17235 0.72 -1.9
494,556 - HMPREF1058_RS17235 0.78 -2.9
494,569 + HMPREF1058_RS17235 0.79 +2.4
494,569 + HMPREF1058_RS17235 0.79 -1.4
494,570 - HMPREF1058_RS17235 0.79 +0.7
494,572 - HMPREF1058_RS17235 0.79 -2.1
494,756 - -0.9
494,794 + -0.6
494,818 + +0.1
494,832 - -1.1
494,872 + -1.6
494,873 - +0.0
494,882 + +2.6
494,883 - -1.2
494,885 - -1.6
494,885 - -1.3
494,998 - -1.8
494,998 - -1.5
495,158 + HMPREF1058_RS17230 0.12 +0.9
495,159 - HMPREF1058_RS17230 0.12 -0.6
495,217 + HMPREF1058_RS17230 0.14 -1.1
495,262 + HMPREF1058_RS17230 0.16 -1.8
495,263 - HMPREF1058_RS17230 0.16 -3.1
495,376 + HMPREF1058_RS17230 0.21 -1.1
495,379 - HMPREF1058_RS17230 0.21 -0.8
495,416 + HMPREF1058_RS17230 0.22 -0.0
495,416 + HMPREF1058_RS17230 0.22 -0.4
495,417 - HMPREF1058_RS17230 0.22 -0.2
495,472 + HMPREF1058_RS17230 0.25 +0.1
495,472 + HMPREF1058_RS17230 0.25 -0.0
495,537 + HMPREF1058_RS17230 0.27 -2.2
495,537 + HMPREF1058_RS17230 0.27 -0.3
495,745 + HMPREF1058_RS17230 0.36 +0.7
495,746 - HMPREF1058_RS17230 0.36 +1.0
495,760 + HMPREF1058_RS17230 0.37 -1.9

Or see this region's nucleotide sequence