Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17110 and HMPREF1058_RS17105 are separated by 222 nucleotides HMPREF1058_RS17105 and HMPREF1058_RS17100 are separated by 154 nucleotides HMPREF1058_RS17100 and HMPREF1058_RS17095 are separated by 160 nucleotides HMPREF1058_RS17095 and HMPREF1058_RS17090 are separated by 5 nucleotides
HMPREF1058_RS17110: HMPREF1058_RS17110 - pirin family protein, at 519,269 to 519,973
_RS17110
HMPREF1058_RS17105: HMPREF1058_RS17105 - hypothetical protein, at 520,196 to 520,489
_RS17105
HMPREF1058_RS17100: HMPREF1058_RS17100 - exodeoxyribonuclease III, at 520,644 to 521,402
_RS17100
HMPREF1058_RS17095: HMPREF1058_RS17095 - preprotein translocase subunit SecG, at 521,563 to 521,928
_RS17095
HMPREF1058_RS17090: HMPREF1058_RS17090 - hypothetical protein, at 521,934 to 522,686
_RS17090
Position (kb) 520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 519.664 kb on + strand, within HMPREF1058_RS17110 at 519.664 kb on + strand, within HMPREF1058_RS17110 at 519.665 kb on - strand, within HMPREF1058_RS17110 at 519.668 kb on + strand, within HMPREF1058_RS17110 at 519.670 kb on + strand, within HMPREF1058_RS17110 at 519.670 kb on + strand, within HMPREF1058_RS17110 at 519.768 kb on + strand, within HMPREF1058_RS17110 at 519.772 kb on + strand, within HMPREF1058_RS17110 at 519.791 kb on - strand, within HMPREF1058_RS17110 at 519.796 kb on - strand, within HMPREF1058_RS17110 at 519.796 kb on - strand, within HMPREF1058_RS17110 at 519.798 kb on + strand, within HMPREF1058_RS17110 at 519.798 kb on + strand, within HMPREF1058_RS17110 at 519.799 kb on - strand, within HMPREF1058_RS17110 at 519.800 kb on + strand, within HMPREF1058_RS17110 at 519.800 kb on + strand, within HMPREF1058_RS17110 at 519.805 kb on + strand, within HMPREF1058_RS17110 at 519.862 kb on - strand, within HMPREF1058_RS17110 at 519.862 kb on - strand, within HMPREF1058_RS17110 at 519.899 kb on - strand, within HMPREF1058_RS17110 at 519.964 kb on - strand at 519.967 kb on + strand at 519.968 kb on - strand at 519.968 kb on - strand at 519.971 kb on + strand at 519.972 kb on - strand at 519.972 kb on - strand at 519.972 kb on - strand at 519.979 kb on - strand at 519.979 kb on - strand at 520.024 kb on + strand at 520.032 kb on + strand at 520.032 kb on + strand at 520.141 kb on + strand at 520.142 kb on - strand at 520.142 kb on - strand at 520.161 kb on - strand at 520.162 kb on + strand at 520.163 kb on - strand at 520.164 kb on + strand at 520.164 kb on + strand at 520.165 kb on - strand at 520.165 kb on - strand at 520.165 kb on - strand at 520.165 kb on - strand at 520.165 kb on - strand at 520.182 kb on - strand at 520.197 kb on + strand at 520.199 kb on + strand at 520.231 kb on + strand, within HMPREF1058_RS17105 at 520.277 kb on + strand, within HMPREF1058_RS17105 at 520.277 kb on + strand, within HMPREF1058_RS17105 at 520.278 kb on - strand, within HMPREF1058_RS17105 at 520.278 kb on - strand, within HMPREF1058_RS17105 at 520.283 kb on - strand, within HMPREF1058_RS17105 at 520.350 kb on + strand, within HMPREF1058_RS17105 at 520.417 kb on + strand, within HMPREF1058_RS17105 at 520.458 kb on + strand, within HMPREF1058_RS17105 at 520.462 kb on + strand at 520.465 kb on - strand at 520.468 kb on + strand at 520.469 kb on - strand at 520.474 kb on + strand at 520.492 kb on + strand at 520.510 kb on + strand at 520.517 kb on - strand at 520.589 kb on + strand at 520.596 kb on - strand at 520.599 kb on + strand at 520.600 kb on - strand at 520.645 kb on + strand at 520.665 kb on + strand at 520.699 kb on + strand at 520.700 kb on - strand at 520.703 kb on + strand at 520.703 kb on + strand at 520.704 kb on - strand at 520.787 kb on + strand, within HMPREF1058_RS17100 at 520.810 kb on + strand, within HMPREF1058_RS17100 at 520.811 kb on - strand, within HMPREF1058_RS17100 at 520.886 kb on + strand, within HMPREF1058_RS17100 at 520.944 kb on + strand, within HMPREF1058_RS17100 at 520.944 kb on + strand, within HMPREF1058_RS17100 at 521.084 kb on + strand, within HMPREF1058_RS17100 at 521.087 kb on - strand, within HMPREF1058_RS17100 at 521.167 kb on + strand, within HMPREF1058_RS17100 at 521.234 kb on - strand, within HMPREF1058_RS17100 at 521.323 kb on - strand, within HMPREF1058_RS17100 at 521.377 kb on - strand at 521.412 kb on - strand at 521.414 kb on + strand at 521.447 kb on + strand at 521.462 kb on - strand at 521.561 kb on - strand at 522.187 kb on - strand, within HMPREF1058_RS17090 at 522.234 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.263 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.319 kb on - strand, within HMPREF1058_RS17090 at 522.375 kb on - strand, within HMPREF1058_RS17090
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 519,664 + HMPREF1058_RS17110 0.56 +0.3 519,664 + HMPREF1058_RS17110 0.56 +0.4 519,665 - HMPREF1058_RS17110 0.56 +0.5 519,668 + HMPREF1058_RS17110 0.57 +0.6 519,670 + HMPREF1058_RS17110 0.57 +0.7 519,670 + HMPREF1058_RS17110 0.57 +0.1 519,768 + HMPREF1058_RS17110 0.71 +0.6 519,772 + HMPREF1058_RS17110 0.71 -0.2 519,791 - HMPREF1058_RS17110 0.74 -0.1 519,796 - HMPREF1058_RS17110 0.75 -0.6 519,796 - HMPREF1058_RS17110 0.75 -0.8 519,798 + HMPREF1058_RS17110 0.75 +0.4 519,798 + HMPREF1058_RS17110 0.75 +0.8 519,799 - HMPREF1058_RS17110 0.75 +0.2 519,800 + HMPREF1058_RS17110 0.75 +1.0 519,800 + HMPREF1058_RS17110 0.75 +0.3 519,805 + HMPREF1058_RS17110 0.76 -0.4 519,862 - HMPREF1058_RS17110 0.84 +0.8 519,862 - HMPREF1058_RS17110 0.84 -2.1 519,899 - HMPREF1058_RS17110 0.89 -0.4 519,964 - -1.3 519,967 + +0.1 519,968 - -0.2 519,968 - -2.0 519,971 + -0.7 519,972 - +0.5 519,972 - +0.5 519,972 - -0.8 519,979 - -0.3 519,979 - +0.1 520,024 + -0.4 520,032 + +0.6 520,032 + -1.1 520,141 + -0.6 520,142 - +0.1 520,142 - +1.7 520,161 - -1.9 520,162 + -1.6 520,163 - +0.4 520,164 + +0.0 520,164 + -0.8 520,165 - -0.1 520,165 - -1.9 520,165 - -1.6 520,165 - +2.3 520,165 - -0.1 520,182 - +1.7 520,197 + -0.1 520,199 + -0.5 520,231 + HMPREF1058_RS17105 0.12 -0.4 520,277 + HMPREF1058_RS17105 0.28 +0.5 520,277 + HMPREF1058_RS17105 0.28 +3.3 520,278 - HMPREF1058_RS17105 0.28 -1.4 520,278 - HMPREF1058_RS17105 0.28 -0.2 520,283 - HMPREF1058_RS17105 0.30 -0.2 520,350 + HMPREF1058_RS17105 0.52 -0.9 520,417 + HMPREF1058_RS17105 0.75 -0.2 520,458 + HMPREF1058_RS17105 0.89 -1.3 520,462 + +0.9 520,465 - +0.1 520,468 + +2.0 520,469 - -0.4 520,474 + -1.9 520,492 + +0.2 520,510 + +0.3 520,517 - +1.0 520,589 + -2.4 520,596 - -2.2 520,599 + -0.3 520,600 - +0.0 520,645 + +2.6 520,665 + +2.3 520,699 + -0.4 520,700 - +0.8 520,703 + +0.4 520,703 + +1.3 520,704 - +0.5 520,787 + HMPREF1058_RS17100 0.19 +0.2 520,810 + HMPREF1058_RS17100 0.22 +0.0 520,811 - HMPREF1058_RS17100 0.22 +0.6 520,886 + HMPREF1058_RS17100 0.32 +0.2 520,944 + HMPREF1058_RS17100 0.40 -0.5 520,944 + HMPREF1058_RS17100 0.40 -0.4 521,084 + HMPREF1058_RS17100 0.58 +1.0 521,087 - HMPREF1058_RS17100 0.58 +1.8 521,167 + HMPREF1058_RS17100 0.69 +1.7 521,234 - HMPREF1058_RS17100 0.78 +0.0 521,323 - HMPREF1058_RS17100 0.89 +1.0 521,377 - +0.8 521,412 - -0.4 521,414 + -2.1 521,447 + -1.3 521,462 - -0.2 521,561 - +0.4 522,187 - HMPREF1058_RS17090 0.34 +1.4 522,234 + HMPREF1058_RS17090 0.40 -0.4 522,261 + HMPREF1058_RS17090 0.43 -1.4 522,261 + HMPREF1058_RS17090 0.43 -2.0 522,261 + HMPREF1058_RS17090 0.43 -1.7 522,261 + HMPREF1058_RS17090 0.43 +1.6 522,262 - HMPREF1058_RS17090 0.44 -1.1 522,262 - HMPREF1058_RS17090 0.44 +0.2 522,263 + HMPREF1058_RS17090 0.44 -1.0 522,305 + HMPREF1058_RS17090 0.49 -0.9 522,305 + HMPREF1058_RS17090 0.49 +0.3 522,306 - HMPREF1058_RS17090 0.49 -0.8 522,306 - HMPREF1058_RS17090 0.49 -0.9 522,319 - HMPREF1058_RS17090 0.51 -0.7 522,375 - HMPREF1058_RS17090 0.59 -2.3
Or see this region's nucleotide sequence