Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16960 and HMPREF1058_RS16955 are separated by 249 nucleotides HMPREF1058_RS16955 and HMPREF1058_RS16950 are separated by 70 nucleotides
HMPREF1058_RS16960: HMPREF1058_RS16960 - 30S ribosomal protein S1, at 550,909 to 552,705
_RS16960
HMPREF1058_RS16955: HMPREF1058_RS16955 - cold shock domain-containing protein, at 552,955 to 553,401
_RS16955
HMPREF1058_RS16950: HMPREF1058_RS16950 - ribonuclease Z, at 553,472 to 554,401
_RS16950
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 552.717 kb on + strand at 552.791 kb on - strand at 552.810 kb on + strand at 552.883 kb on + strand at 552.884 kb on - strand at 552.892 kb on - strand at 552.894 kb on + strand at 552.902 kb on + strand at 552.929 kb on + strand at 552.930 kb on - strand at 552.937 kb on + strand at 552.938 kb on - strand at 552.966 kb on + strand at 552.989 kb on + strand at 553.074 kb on + strand, within HMPREF1058_RS16955 at 553.088 kb on + strand, within HMPREF1058_RS16955 at 553.088 kb on + strand, within HMPREF1058_RS16955 at 553.089 kb on - strand, within HMPREF1058_RS16955 at 553.131 kb on + strand, within HMPREF1058_RS16955 at 553.132 kb on - strand, within HMPREF1058_RS16955 at 553.152 kb on + strand, within HMPREF1058_RS16955 at 553.182 kb on + strand, within HMPREF1058_RS16955 at 553.205 kb on + strand, within HMPREF1058_RS16955 at 553.223 kb on + strand, within HMPREF1058_RS16955 at 553.223 kb on + strand, within HMPREF1058_RS16955 at 553.224 kb on - strand, within HMPREF1058_RS16955 at 553.224 kb on - strand, within HMPREF1058_RS16955 at 553.286 kb on - strand, within HMPREF1058_RS16955 at 553.322 kb on + strand, within HMPREF1058_RS16955 at 553.385 kb on + strand at 553.411 kb on - strand at 553.488 kb on + strand at 553.489 kb on - strand at 553.489 kb on - strand at 553.492 kb on + strand at 553.493 kb on - strand at 553.493 kb on - strand at 553.497 kb on + strand at 553.497 kb on + strand at 553.497 kb on + strand at 553.498 kb on - strand at 553.556 kb on - strand at 553.645 kb on + strand, within HMPREF1058_RS16950 at 553.647 kb on + strand, within HMPREF1058_RS16950 at 553.647 kb on + strand, within HMPREF1058_RS16950 at 553.648 kb on - strand, within HMPREF1058_RS16950 at 553.736 kb on + strand, within HMPREF1058_RS16950 at 553.736 kb on + strand, within HMPREF1058_RS16950 at 553.739 kb on - strand, within HMPREF1058_RS16950 at 553.758 kb on + strand, within HMPREF1058_RS16950 at 553.759 kb on - strand, within HMPREF1058_RS16950 at 553.772 kb on - strand, within HMPREF1058_RS16950 at 553.772 kb on - strand, within HMPREF1058_RS16950 at 553.801 kb on + strand, within HMPREF1058_RS16950 at 553.809 kb on - strand, within HMPREF1058_RS16950 at 553.851 kb on + strand, within HMPREF1058_RS16950 at 553.857 kb on - strand, within HMPREF1058_RS16950 at 553.857 kb on - strand, within HMPREF1058_RS16950 at 553.893 kb on + strand, within HMPREF1058_RS16950 at 553.951 kb on + strand, within HMPREF1058_RS16950 at 554.049 kb on + strand, within HMPREF1058_RS16950 at 554.099 kb on + strand, within HMPREF1058_RS16950 at 554.099 kb on + strand, within HMPREF1058_RS16950 at 554.111 kb on - strand, within HMPREF1058_RS16950 at 554.111 kb on - strand, within HMPREF1058_RS16950 at 554.113 kb on + strand, within HMPREF1058_RS16950 at 554.114 kb on - strand, within HMPREF1058_RS16950 at 554.118 kb on - strand, within HMPREF1058_RS16950 at 554.142 kb on + strand, within HMPREF1058_RS16950 at 554.145 kb on - strand, within HMPREF1058_RS16950 at 554.262 kb on + strand, within HMPREF1058_RS16950 at 554.319 kb on + strand at 554.352 kb on + strand at 554.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 552,717 + +1.8 552,791 - +1.3 552,810 + +1.0 552,883 + -0.2 552,884 - -0.3 552,892 - +0.0 552,894 + -0.4 552,902 + +0.1 552,929 + -0.3 552,930 - -0.8 552,937 + -0.6 552,938 - -0.2 552,966 + +0.5 552,989 + +0.6 553,074 + HMPREF1058_RS16955 0.27 -0.3 553,088 + HMPREF1058_RS16955 0.30 +1.0 553,088 + HMPREF1058_RS16955 0.30 +2.5 553,089 - HMPREF1058_RS16955 0.30 -0.2 553,131 + HMPREF1058_RS16955 0.39 +1.7 553,132 - HMPREF1058_RS16955 0.40 +1.3 553,152 + HMPREF1058_RS16955 0.44 +0.4 553,182 + HMPREF1058_RS16955 0.51 +2.5 553,205 + HMPREF1058_RS16955 0.56 +1.5 553,223 + HMPREF1058_RS16955 0.60 +1.0 553,223 + HMPREF1058_RS16955 0.60 +0.1 553,224 - HMPREF1058_RS16955 0.60 -1.8 553,224 - HMPREF1058_RS16955 0.60 +0.3 553,286 - HMPREF1058_RS16955 0.74 -0.9 553,322 + HMPREF1058_RS16955 0.82 +1.5 553,385 + +1.0 553,411 - -2.6 553,488 + +2.0 553,489 - -1.9 553,489 - -0.3 553,492 + +0.7 553,493 - -0.8 553,493 - -0.4 553,497 + +0.9 553,497 + +1.4 553,497 + +0.6 553,498 - -1.2 553,556 - -0.1 553,645 + HMPREF1058_RS16950 0.19 +1.3 553,647 + HMPREF1058_RS16950 0.19 +0.2 553,647 + HMPREF1058_RS16950 0.19 -0.3 553,648 - HMPREF1058_RS16950 0.19 -0.8 553,736 + HMPREF1058_RS16950 0.28 -0.6 553,736 + HMPREF1058_RS16950 0.28 -1.3 553,739 - HMPREF1058_RS16950 0.29 +1.5 553,758 + HMPREF1058_RS16950 0.31 +0.4 553,759 - HMPREF1058_RS16950 0.31 -0.0 553,772 - HMPREF1058_RS16950 0.32 -1.2 553,772 - HMPREF1058_RS16950 0.32 -1.6 553,801 + HMPREF1058_RS16950 0.35 -0.6 553,809 - HMPREF1058_RS16950 0.36 +0.2 553,851 + HMPREF1058_RS16950 0.41 +1.2 553,857 - HMPREF1058_RS16950 0.41 -0.6 553,857 - HMPREF1058_RS16950 0.41 +1.1 553,893 + HMPREF1058_RS16950 0.45 +2.5 553,951 + HMPREF1058_RS16950 0.52 +0.1 554,049 + HMPREF1058_RS16950 0.62 +1.3 554,099 + HMPREF1058_RS16950 0.67 -0.1 554,099 + HMPREF1058_RS16950 0.67 +0.4 554,111 - HMPREF1058_RS16950 0.69 -0.0 554,111 - HMPREF1058_RS16950 0.69 +0.5 554,113 + HMPREF1058_RS16950 0.69 +1.5 554,114 - HMPREF1058_RS16950 0.69 +0.7 554,118 - HMPREF1058_RS16950 0.69 -0.8 554,142 + HMPREF1058_RS16950 0.72 -0.1 554,145 - HMPREF1058_RS16950 0.72 +0.9 554,262 + HMPREF1058_RS16950 0.85 +0.5 554,319 + -0.5 554,352 + -0.6 554,400 - -0.6
Or see this region's nucleotide sequence