Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16685 and HMPREF1058_RS16680 are separated by 37 nucleotides HMPREF1058_RS16680 and HMPREF1058_RS16675 overlap by 1 nucleotides HMPREF1058_RS16675 and HMPREF1058_RS16670 are separated by 374 nucleotides
HMPREF1058_RS16685: HMPREF1058_RS16685 - methionine synthase, at 617,107 to 619,860
_RS16685
HMPREF1058_RS16680: HMPREF1058_RS16680 - SsrA-binding protein, at 619,898 to 620,350
_RS16680
HMPREF1058_RS16675: HMPREF1058_RS16675 - DUF1282 family protein, at 620,350 to 620,919
_RS16675
HMPREF1058_RS16670: HMPREF1058_RS16670 - site-specific integrase, at 621,294 to 622,382
_RS16670
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 619.406 kb on + strand, within HMPREF1058_RS16685 at 619.468 kb on - strand, within HMPREF1058_RS16685 at 619.500 kb on + strand, within HMPREF1058_RS16685 at 619.518 kb on + strand, within HMPREF1058_RS16685 at 619.521 kb on - strand, within HMPREF1058_RS16685 at 619.627 kb on - strand at 619.639 kb on - strand at 619.641 kb on + strand at 619.641 kb on + strand at 619.642 kb on - strand at 619.661 kb on + strand at 619.661 kb on + strand at 619.666 kb on - strand at 619.783 kb on - strand at 619.783 kb on - strand at 619.840 kb on + strand at 619.849 kb on + strand at 619.860 kb on + strand at 619.860 kb on + strand at 619.860 kb on + strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.899 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 620.436 kb on - strand, within HMPREF1058_RS16675 at 620.473 kb on - strand, within HMPREF1058_RS16675 at 620.591 kb on - strand, within HMPREF1058_RS16675 at 620.591 kb on - strand, within HMPREF1058_RS16675 at 620.606 kb on - strand, within HMPREF1058_RS16675 at 620.661 kb on - strand, within HMPREF1058_RS16675 at 620.693 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.764 kb on - strand, within HMPREF1058_RS16675 at 620.764 kb on - strand, within HMPREF1058_RS16675 at 620.768 kb on - strand, within HMPREF1058_RS16675 at 620.795 kb on - strand, within HMPREF1058_RS16675 at 620.795 kb on - strand, within HMPREF1058_RS16675 at 620.913 kb on - strand at 620.930 kb on - strand at 621.002 kb on + strand at 621.003 kb on - strand at 621.029 kb on - strand at 621.040 kb on + strand at 621.063 kb on - strand at 621.091 kb on - strand at 621.119 kb on - strand at 621.123 kb on + strand at 621.153 kb on + strand at 621.153 kb on + strand at 621.155 kb on + strand at 621.155 kb on + strand at 621.156 kb on - strand at 621.156 kb on - strand at 621.162 kb on - strand at 621.174 kb on - strand at 621.246 kb on + strand at 621.262 kb on + strand at 621.290 kb on + strand at 621.291 kb on - strand at 621.294 kb on - strand at 621.367 kb on + strand at 621.368 kb on - strand at 621.409 kb on + strand, within HMPREF1058_RS16670 at 621.413 kb on + strand, within HMPREF1058_RS16670 at 621.414 kb on - strand, within HMPREF1058_RS16670 at 621.414 kb on - strand, within HMPREF1058_RS16670 at 621.417 kb on + strand, within HMPREF1058_RS16670 at 621.417 kb on + strand, within HMPREF1058_RS16670 at 621.417 kb on + strand, within HMPREF1058_RS16670 at 621.417 kb on + strand, within HMPREF1058_RS16670 at 621.417 kb on + strand, within HMPREF1058_RS16670 at 621.418 kb on - strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.419 kb on + strand, within HMPREF1058_RS16670 at 621.420 kb on - strand, within HMPREF1058_RS16670 at 621.420 kb on - strand, within HMPREF1058_RS16670 at 621.423 kb on + strand, within HMPREF1058_RS16670 at 621.506 kb on - strand at 621.651 kb on - strand, within HMPREF1058_RS16670 at 621.706 kb on + strand, within HMPREF1058_RS16670 at 621.706 kb on + strand, within HMPREF1058_RS16670 at 621.707 kb on - strand, within HMPREF1058_RS16670 at 621.719 kb on - strand, within HMPREF1058_RS16670 at 621.761 kb on + strand, within HMPREF1058_RS16670 at 621.767 kb on - strand, within HMPREF1058_RS16670 at 621.767 kb on - strand, within HMPREF1058_RS16670 at 621.829 kb on + strand, within HMPREF1058_RS16670 at 621.838 kb on + strand, within HMPREF1058_RS16670 at 621.900 kb on + strand, within HMPREF1058_RS16670 at 621.901 kb on - strand, within HMPREF1058_RS16670 at 621.907 kb on + strand, within HMPREF1058_RS16670 at 621.908 kb on - strand, within HMPREF1058_RS16670 at 621.908 kb on - strand, within HMPREF1058_RS16670 at 621.910 kb on - strand, within HMPREF1058_RS16670 at 621.912 kb on - strand, within HMPREF1058_RS16670 at 621.912 kb on - strand, within HMPREF1058_RS16670 at 621.912 kb on - strand, within HMPREF1058_RS16670
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 619,406 + HMPREF1058_RS16685 0.83 -1.1 619,468 - HMPREF1058_RS16685 0.86 +1.5 619,500 + HMPREF1058_RS16685 0.87 -0.3 619,518 + HMPREF1058_RS16685 0.88 +0.2 619,521 - HMPREF1058_RS16685 0.88 -0.9 619,627 - +1.0 619,639 - +0.1 619,641 + -1.8 619,641 + -2.2 619,642 - +1.7 619,661 + +0.1 619,661 + -1.1 619,666 - +0.1 619,783 - -0.1 619,783 - +1.2 619,840 + +0.6 619,849 + +2.7 619,860 + +0.3 619,860 + +1.1 619,860 + -0.7 619,861 - -0.5 619,861 - -1.0 619,861 - -0.3 619,861 - -0.1 619,899 + -0.8 619,912 + +0.4 619,912 + -1.3 619,912 + -1.3 619,912 + -0.3 620,436 - HMPREF1058_RS16675 0.15 +0.2 620,473 - HMPREF1058_RS16675 0.22 +0.8 620,591 - HMPREF1058_RS16675 0.42 +0.2 620,591 - HMPREF1058_RS16675 0.42 +0.4 620,606 - HMPREF1058_RS16675 0.45 +0.1 620,661 - HMPREF1058_RS16675 0.55 +1.9 620,693 - HMPREF1058_RS16675 0.60 +2.0 620,701 - HMPREF1058_RS16675 0.62 +0.3 620,701 - HMPREF1058_RS16675 0.62 +2.6 620,701 - HMPREF1058_RS16675 0.62 -1.3 620,764 - HMPREF1058_RS16675 0.73 -0.6 620,764 - HMPREF1058_RS16675 0.73 +1.1 620,768 - HMPREF1058_RS16675 0.73 +0.6 620,795 - HMPREF1058_RS16675 0.78 +0.8 620,795 - HMPREF1058_RS16675 0.78 +0.7 620,913 - -0.4 620,930 - +0.1 621,002 + -1.0 621,003 - +0.6 621,029 - -1.3 621,040 + -0.0 621,063 - -1.4 621,091 - +0.7 621,119 - +0.0 621,123 + -1.0 621,153 + -1.4 621,153 + +1.9 621,155 + -2.5 621,155 + -0.1 621,156 - -1.2 621,156 - -1.6 621,162 - -1.5 621,174 - -0.9 621,246 + +0.3 621,262 + -0.7 621,290 + +1.1 621,291 - -0.8 621,294 - +0.2 621,367 + +1.0 621,368 - -0.4 621,409 + HMPREF1058_RS16670 0.11 +0.2 621,413 + HMPREF1058_RS16670 0.11 -1.1 621,414 - HMPREF1058_RS16670 0.11 -1.6 621,414 - HMPREF1058_RS16670 0.11 -0.7 621,417 + HMPREF1058_RS16670 0.11 +0.2 621,417 + HMPREF1058_RS16670 0.11 +0.7 621,417 + HMPREF1058_RS16670 0.11 -0.8 621,417 + HMPREF1058_RS16670 0.11 +0.0 621,417 + HMPREF1058_RS16670 0.11 -0.0 621,418 - HMPREF1058_RS16670 0.11 -2.6 621,419 + HMPREF1058_RS16670 0.11 +0.7 621,419 + HMPREF1058_RS16670 0.11 -1.0 621,419 + HMPREF1058_RS16670 0.11 -0.7 621,419 + HMPREF1058_RS16670 0.11 +0.2 621,419 + HMPREF1058_RS16670 0.11 -0.3 621,419 + HMPREF1058_RS16670 0.11 +2.4 621,420 - HMPREF1058_RS16670 0.12 -0.1 621,420 - HMPREF1058_RS16670 0.12 -0.6 621,423 + HMPREF1058_RS16670 0.12 -2.7 621,506 - +3.9 621,651 - HMPREF1058_RS16670 0.33 -2.2 621,706 + HMPREF1058_RS16670 0.38 +0.6 621,706 + HMPREF1058_RS16670 0.38 -0.6 621,707 - HMPREF1058_RS16670 0.38 -0.2 621,719 - HMPREF1058_RS16670 0.39 -0.3 621,761 + HMPREF1058_RS16670 0.43 +0.5 621,767 - HMPREF1058_RS16670 0.43 -2.6 621,767 - HMPREF1058_RS16670 0.43 -0.3 621,829 + HMPREF1058_RS16670 0.49 +0.7 621,838 + HMPREF1058_RS16670 0.50 +0.3 621,900 + HMPREF1058_RS16670 0.56 +0.4 621,901 - HMPREF1058_RS16670 0.56 -0.8 621,907 + HMPREF1058_RS16670 0.56 -0.8 621,908 - HMPREF1058_RS16670 0.56 -1.4 621,908 - HMPREF1058_RS16670 0.56 -0.4 621,910 - HMPREF1058_RS16670 0.57 -0.6 621,912 - HMPREF1058_RS16670 0.57 +0.5 621,912 - HMPREF1058_RS16670 0.57 -2.3 621,912 - HMPREF1058_RS16670 0.57 +0.3
Or see this region's nucleotide sequence