Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotides HMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotides
HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177
_RS16250
HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998
_RS16245
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
Position (kb) 724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 723.212 kb on - strand, within HMPREF1058_RS16250 at 723.293 kb on + strand, within HMPREF1058_RS16250 at 723.337 kb on - strand, within HMPREF1058_RS16250 at 723.343 kb on + strand, within HMPREF1058_RS16250 at 723.344 kb on - strand, within HMPREF1058_RS16250 at 723.590 kb on + strand, within HMPREF1058_RS16250 at 723.741 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.858 kb on - strand at 723.972 kb on - strand, within HMPREF1058_RS16250 at 724.010 kb on - strand at 724.145 kb on + strand at 724.146 kb on - strand at 724.146 kb on - strand at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.497 kb on + strand, within HMPREF1058_RS16245 at 724.616 kb on + strand, within HMPREF1058_RS16245 at 724.877 kb on + strand, within HMPREF1058_RS16245 at 724.878 kb on - strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.910 kb on - strand, within HMPREF1058_RS16245 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand at 725.256 kb on + strand, within HMPREF1058_RS16240 at 725.782 kb on + strand at 725.838 kb on + strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 723,212 - HMPREF1058_RS16250 0.42 -2.2 723,293 + HMPREF1058_RS16250 0.47 -2.0 723,337 - HMPREF1058_RS16250 0.50 -1.2 723,343 + HMPREF1058_RS16250 0.50 -0.6 723,344 - HMPREF1058_RS16250 0.50 -2.0 723,590 + HMPREF1058_RS16250 0.65 -3.1 723,741 + HMPREF1058_RS16250 0.74 -0.6 723,827 + HMPREF1058_RS16250 0.79 -1.8 723,827 + HMPREF1058_RS16250 0.79 -1.1 723,858 - +0.0 723,972 - HMPREF1058_RS16250 0.88 -2.0 724,010 - -2.9 724,145 + -2.1 724,146 - -3.2 724,146 - -1.2 724,473 - HMPREF1058_RS16245 0.36 +2.6 724,473 - HMPREF1058_RS16245 0.36 +0.5 724,497 + HMPREF1058_RS16245 0.39 +2.4 724,616 + HMPREF1058_RS16245 0.53 +1.9 724,877 + HMPREF1058_RS16245 0.85 +1.9 724,878 - HMPREF1058_RS16245 0.85 +0.5 724,909 + HMPREF1058_RS16245 0.89 +2.2 724,909 + HMPREF1058_RS16245 0.89 +1.0 724,910 - HMPREF1058_RS16245 0.89 +0.2 725,143 + -0.7 725,143 + +1.2 725,145 + -1.2 725,145 + -0.6 725,145 + -0.1 725,147 + +0.4 725,161 + +0.8 725,256 + HMPREF1058_RS16240 0.17 -2.3 725,782 + +1.0 725,838 + HMPREF1058_RS16240 0.72 -0.5 725,839 - HMPREF1058_RS16240 0.72 +3.8 725,839 - HMPREF1058_RS16240 0.72 -0.0
Or see this region's nucleotide sequence