Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotides HMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotides HMPREF1058_RS16240 and HMPREF1058_RS16235 overlap by 4 nucleotides
HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177
_RS16250
HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998
_RS16245
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
HMPREF1058_RS16235: HMPREF1058_RS16235 - AMP-binding protein, at 726,128 to 727,213
_RS16235
Position (kb) 725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 724.145 kb on + strand at 724.146 kb on - strand at 724.146 kb on - strand at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.497 kb on + strand, within HMPREF1058_RS16245 at 724.616 kb on + strand, within HMPREF1058_RS16245 at 724.877 kb on + strand, within HMPREF1058_RS16245 at 724.878 kb on - strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.910 kb on - strand, within HMPREF1058_RS16245 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand at 725.256 kb on + strand, within HMPREF1058_RS16240 at 725.782 kb on + strand at 725.838 kb on + strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 726.041 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.308 kb on - strand, within HMPREF1058_RS16235 at 726.342 kb on - strand, within HMPREF1058_RS16235 at 726.427 kb on + strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.466 kb on - strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.834 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 727.083 kb on + strand, within HMPREF1058_RS16235 at 727.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 724,145 + -2.1 724,146 - -3.2 724,146 - -1.2 724,473 - HMPREF1058_RS16245 0.36 +2.6 724,473 - HMPREF1058_RS16245 0.36 +0.5 724,497 + HMPREF1058_RS16245 0.39 +2.4 724,616 + HMPREF1058_RS16245 0.53 +1.9 724,877 + HMPREF1058_RS16245 0.85 +1.9 724,878 - HMPREF1058_RS16245 0.85 +0.5 724,909 + HMPREF1058_RS16245 0.89 +2.2 724,909 + HMPREF1058_RS16245 0.89 +1.0 724,910 - HMPREF1058_RS16245 0.89 +0.2 725,143 + -0.7 725,143 + +1.2 725,145 + -1.2 725,145 + -0.6 725,145 + -0.1 725,147 + +0.4 725,161 + +0.8 725,256 + HMPREF1058_RS16240 0.17 -2.3 725,782 + +1.0 725,838 + HMPREF1058_RS16240 0.72 -0.5 725,839 - HMPREF1058_RS16240 0.72 +3.8 725,839 - HMPREF1058_RS16240 0.72 -0.0 726,041 + +1.1 726,043 + +1.2 726,044 - +1.5 726,044 - +0.8 726,044 - +0.9 726,308 - HMPREF1058_RS16235 0.17 +1.1 726,342 - HMPREF1058_RS16235 0.20 +0.0 726,427 + HMPREF1058_RS16235 0.28 +2.3 726,428 - HMPREF1058_RS16235 0.28 -0.6 726,428 - HMPREF1058_RS16235 0.28 +1.8 726,441 - HMPREF1058_RS16235 0.29 +1.8 726,441 - HMPREF1058_RS16235 0.29 +0.5 726,465 + HMPREF1058_RS16235 0.31 +1.0 726,465 + HMPREF1058_RS16235 0.31 +1.0 726,466 - HMPREF1058_RS16235 0.31 +2.0 726,833 + HMPREF1058_RS16235 0.65 +1.0 726,833 + HMPREF1058_RS16235 0.65 -0.1 726,834 - HMPREF1058_RS16235 0.65 -1.3 726,877 - HMPREF1058_RS16235 0.69 +0.3 726,877 - HMPREF1058_RS16235 0.69 +1.2 726,877 - HMPREF1058_RS16235 0.69 +0.8 726,961 - HMPREF1058_RS16235 0.77 +1.2 726,961 - HMPREF1058_RS16235 0.77 +0.0 727,083 + HMPREF1058_RS16235 0.88 +1.3 727,107 + +1.6
Or see this region's nucleotide sequence