Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16240 and HMPREF1058_RS16235 overlap by 4 nucleotides HMPREF1058_RS16235 and HMPREF1058_RS16230 are separated by 255 nucleotides
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
HMPREF1058_RS16235: HMPREF1058_RS16235 - AMP-binding protein, at 726,128 to 727,213
_RS16235
HMPREF1058_RS16230: HMPREF1058_RS16230 - AraC family transcriptional regulator, at 727,469 to 728,353
_RS16230
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand at 725.256 kb on + strand, within HMPREF1058_RS16240 at 725.782 kb on + strand at 725.838 kb on + strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 725.839 kb on - strand, within HMPREF1058_RS16240 at 726.041 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.044 kb on - strand at 726.308 kb on - strand, within HMPREF1058_RS16235 at 726.342 kb on - strand, within HMPREF1058_RS16235 at 726.427 kb on + strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.428 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.441 kb on - strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.465 kb on + strand, within HMPREF1058_RS16235 at 726.466 kb on - strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.833 kb on + strand, within HMPREF1058_RS16235 at 726.834 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.877 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 726.961 kb on - strand, within HMPREF1058_RS16235 at 727.083 kb on + strand, within HMPREF1058_RS16235 at 727.107 kb on + strand at 727.229 kb on - strand at 727.350 kb on + strand at 727.400 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.476 kb on - strand at 727.476 kb on - strand at 727.478 kb on - strand at 727.478 kb on - strand at 727.535 kb on + strand at 727.536 kb on - strand at 727.537 kb on + strand at 727.577 kb on + strand, within HMPREF1058_RS16230 at 727.602 kb on + strand, within HMPREF1058_RS16230 at 727.602 kb on + strand, within HMPREF1058_RS16230 at 727.603 kb on - strand, within HMPREF1058_RS16230 at 727.646 kb on + strand, within HMPREF1058_RS16230 at 727.652 kb on - strand, within HMPREF1058_RS16230 at 727.811 kb on + strand, within HMPREF1058_RS16230 at 727.812 kb on - strand, within HMPREF1058_RS16230 at 727.812 kb on - strand, within HMPREF1058_RS16230 at 727.884 kb on + strand, within HMPREF1058_RS16230 at 727.886 kb on + strand, within HMPREF1058_RS16230 at 727.887 kb on - strand, within HMPREF1058_RS16230 at 727.931 kb on - strand, within HMPREF1058_RS16230 at 727.980 kb on - strand, within HMPREF1058_RS16230 at 727.999 kb on + strand, within HMPREF1058_RS16230 at 728.000 kb on - strand, within HMPREF1058_RS16230 at 728.121 kb on - strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.175 kb on + strand, within HMPREF1058_RS16230 at 728.176 kb on - strand, within HMPREF1058_RS16230 at 728.176 kb on - strand at 728.176 kb on - strand, within HMPREF1058_RS16230 at 728.198 kb on + strand, within HMPREF1058_RS16230
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 725,143 + -0.7 725,143 + +1.2 725,145 + -1.2 725,145 + -0.6 725,145 + -0.1 725,147 + +0.4 725,161 + +0.8 725,256 + HMPREF1058_RS16240 0.17 -2.3 725,782 + +1.0 725,838 + HMPREF1058_RS16240 0.72 -0.5 725,839 - HMPREF1058_RS16240 0.72 +3.8 725,839 - HMPREF1058_RS16240 0.72 -0.0 726,041 + +1.1 726,043 + +1.2 726,044 - +1.5 726,044 - +0.8 726,044 - +0.9 726,308 - HMPREF1058_RS16235 0.17 +1.1 726,342 - HMPREF1058_RS16235 0.20 +0.0 726,427 + HMPREF1058_RS16235 0.28 +2.3 726,428 - HMPREF1058_RS16235 0.28 -0.6 726,428 - HMPREF1058_RS16235 0.28 +1.8 726,441 - HMPREF1058_RS16235 0.29 +1.8 726,441 - HMPREF1058_RS16235 0.29 +0.5 726,465 + HMPREF1058_RS16235 0.31 +1.0 726,465 + HMPREF1058_RS16235 0.31 +1.0 726,466 - HMPREF1058_RS16235 0.31 +2.0 726,833 + HMPREF1058_RS16235 0.65 +1.0 726,833 + HMPREF1058_RS16235 0.65 -0.1 726,834 - HMPREF1058_RS16235 0.65 -1.3 726,877 - HMPREF1058_RS16235 0.69 +0.3 726,877 - HMPREF1058_RS16235 0.69 +1.2 726,877 - HMPREF1058_RS16235 0.69 +0.8 726,961 - HMPREF1058_RS16235 0.77 +1.2 726,961 - HMPREF1058_RS16235 0.77 +0.0 727,083 + HMPREF1058_RS16235 0.88 +1.3 727,107 + +1.6 727,229 - +1.3 727,350 + +1.4 727,400 + +0.3 727,468 + +0.3 727,468 + -1.0 727,468 + -0.4 727,468 + -0.7 727,469 - -0.6 727,476 - -0.8 727,476 - -0.7 727,478 - -0.7 727,478 - +0.8 727,535 + +0.4 727,536 - +0.6 727,537 + +0.2 727,577 + HMPREF1058_RS16230 0.12 -0.5 727,602 + HMPREF1058_RS16230 0.15 -1.3 727,602 + HMPREF1058_RS16230 0.15 +0.1 727,603 - HMPREF1058_RS16230 0.15 +2.5 727,646 + HMPREF1058_RS16230 0.20 -0.3 727,652 - HMPREF1058_RS16230 0.21 -0.8 727,811 + HMPREF1058_RS16230 0.39 -0.1 727,812 - HMPREF1058_RS16230 0.39 +1.5 727,812 - HMPREF1058_RS16230 0.39 +2.6 727,884 + HMPREF1058_RS16230 0.47 +1.2 727,886 + HMPREF1058_RS16230 0.47 -1.0 727,887 - HMPREF1058_RS16230 0.47 -1.5 727,931 - HMPREF1058_RS16230 0.52 +0.2 727,980 - HMPREF1058_RS16230 0.58 +0.8 727,999 + HMPREF1058_RS16230 0.60 +0.4 728,000 - HMPREF1058_RS16230 0.60 +0.8 728,121 - HMPREF1058_RS16230 0.74 +1.5 728,175 + HMPREF1058_RS16230 0.80 +0.9 728,175 + HMPREF1058_RS16230 0.80 +0.1 728,175 + HMPREF1058_RS16230 0.80 -1.3 728,175 + HMPREF1058_RS16230 0.80 +1.1 728,176 - HMPREF1058_RS16230 0.80 -0.9 728,176 - -0.5 728,176 - HMPREF1058_RS16230 0.80 +0.4 728,198 + HMPREF1058_RS16230 0.82 +3.9
Or see this region's nucleotide sequence