Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16180 and HMPREF1058_RS16175 are separated by 7 nucleotides HMPREF1058_RS16175 and HMPREF1058_RS16170 are separated by 47 nucleotides HMPREF1058_RS16170 and HMPREF1058_RS16165 overlap by 1 nucleotides HMPREF1058_RS16165 and HMPREF1058_RS16160 overlap by 4 nucleotides
HMPREF1058_RS16180: HMPREF1058_RS16180 - YjbH domain-containing protein, at 738,016 to 738,822
_RS16180
HMPREF1058_RS16175: HMPREF1058_RS16175 - WecB/TagA/CpsF family glycosyltransferase, at 738,830 to 739,570
_RS16175
HMPREF1058_RS16170: HMPREF1058_RS16170 - glycosyltransferase, at 739,618 to 740,796
_RS16170
HMPREF1058_RS16165: HMPREF1058_RS16165 - glycoside hydrolase family 16 protein, at 740,796 to 741,560
_RS16165
HMPREF1058_RS16160: HMPREF1058_RS16160 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 741,557 to 742,744
_RS16160
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 738.618 kb on - strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.629 kb on + strand, within HMPREF1058_RS16180 at 738.654 kb on - strand, within HMPREF1058_RS16180 at 738.657 kb on + strand, within HMPREF1058_RS16180 at 738.733 kb on - strand, within HMPREF1058_RS16180 at 738.757 kb on + strand at 738.757 kb on + strand at 738.758 kb on - strand at 738.775 kb on + strand at 738.790 kb on + strand at 738.816 kb on + strand at 738.816 kb on + strand at 738.853 kb on - strand at 738.853 kb on - strand at 738.916 kb on - strand, within HMPREF1058_RS16175 at 738.946 kb on + strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.947 kb on - strand, within HMPREF1058_RS16175 at 738.970 kb on + strand, within HMPREF1058_RS16175 at 738.991 kb on - strand, within HMPREF1058_RS16175 at 739.006 kb on + strand, within HMPREF1058_RS16175 at 739.067 kb on - strand, within HMPREF1058_RS16175 at 739.113 kb on - strand, within HMPREF1058_RS16175 at 739.132 kb on + strand, within HMPREF1058_RS16175 at 739.132 kb on + strand, within HMPREF1058_RS16175 at 739.142 kb on - strand, within HMPREF1058_RS16175 at 739.144 kb on + strand, within HMPREF1058_RS16175 at 739.185 kb on + strand, within HMPREF1058_RS16175 at 739.232 kb on - strand, within HMPREF1058_RS16175 at 739.281 kb on + strand, within HMPREF1058_RS16175 at 739.282 kb on - strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.373 kb on + strand, within HMPREF1058_RS16175 at 739.376 kb on + strand, within HMPREF1058_RS16175 at 739.501 kb on + strand at 739.546 kb on + strand at 739.547 kb on - strand at 739.571 kb on - strand at 739.595 kb on - strand at 739.595 kb on - strand at 739.621 kb on + strand at 739.621 kb on + strand at 739.633 kb on + strand at 739.656 kb on - strand at 739.678 kb on - strand at 739.742 kb on - strand, within HMPREF1058_RS16170 at 739.765 kb on + strand, within HMPREF1058_RS16170 at 739.813 kb on + strand, within HMPREF1058_RS16170 at 739.892 kb on - strand, within HMPREF1058_RS16170 at 739.900 kb on + strand, within HMPREF1058_RS16170 at 739.949 kb on - strand, within HMPREF1058_RS16170 at 739.951 kb on - strand, within HMPREF1058_RS16170 at 739.957 kb on + strand, within HMPREF1058_RS16170 at 739.983 kb on + strand, within HMPREF1058_RS16170 at 739.985 kb on + strand, within HMPREF1058_RS16170 at 739.986 kb on - strand, within HMPREF1058_RS16170 at 739.990 kb on - strand, within HMPREF1058_RS16170 at 740.005 kb on - strand, within HMPREF1058_RS16170 at 740.020 kb on - strand, within HMPREF1058_RS16170 at 740.051 kb on - strand, within HMPREF1058_RS16170 at 740.060 kb on - strand, within HMPREF1058_RS16170 at 740.072 kb on + strand, within HMPREF1058_RS16170 at 740.072 kb on + strand, within HMPREF1058_RS16170 at 740.073 kb on - strand, within HMPREF1058_RS16170 at 740.183 kb on - strand, within HMPREF1058_RS16170 at 740.275 kb on - strand, within HMPREF1058_RS16170 at 740.350 kb on + strand, within HMPREF1058_RS16170 at 740.353 kb on + strand, within HMPREF1058_RS16170 at 740.359 kb on - strand, within HMPREF1058_RS16170 at 740.373 kb on + strand, within HMPREF1058_RS16170 at 740.389 kb on - strand, within HMPREF1058_RS16170 at 740.389 kb on - strand, within HMPREF1058_RS16170 at 740.393 kb on + strand, within HMPREF1058_RS16170 at 740.638 kb on + strand, within HMPREF1058_RS16170 at 740.673 kb on + strand, within HMPREF1058_RS16170 at 740.674 kb on - strand, within HMPREF1058_RS16170 at 740.764 kb on - strand at 740.767 kb on + strand at 740.768 kb on - strand at 740.769 kb on + strand at 740.782 kb on + strand at 740.783 kb on - strand at 740.813 kb on - strand at 740.816 kb on - strand at 741.012 kb on + strand, within HMPREF1058_RS16165 at 741.125 kb on + strand, within HMPREF1058_RS16165 at 741.143 kb on + strand, within HMPREF1058_RS16165 at 741.145 kb on + strand, within HMPREF1058_RS16165 at 741.216 kb on - strand, within HMPREF1058_RS16165 at 741.288 kb on + strand, within HMPREF1058_RS16165 at 741.350 kb on + strand, within HMPREF1058_RS16165 at 741.351 kb on - strand, within HMPREF1058_RS16165 at 741.387 kb on - strand, within HMPREF1058_RS16165 at 741.422 kb on + strand, within HMPREF1058_RS16165 at 741.422 kb on + strand, within HMPREF1058_RS16165 at 741.423 kb on - strand, within HMPREF1058_RS16165 at 741.423 kb on - strand, within HMPREF1058_RS16165 at 741.423 kb on - strand, within HMPREF1058_RS16165 at 741.424 kb on + strand, within HMPREF1058_RS16165 at 741.425 kb on - strand, within HMPREF1058_RS16165 at 741.452 kb on + strand, within HMPREF1058_RS16165 at 741.453 kb on - strand, within HMPREF1058_RS16165 at 741.531 kb on + strand at 741.531 kb on + strand at 741.531 kb on + strand at 741.536 kb on - strand at 741.601 kb on + strand at 741.631 kb on + strand at 741.744 kb on - strand, within HMPREF1058_RS16160
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 738,618 - HMPREF1058_RS16180 0.75 -1.9 738,629 + HMPREF1058_RS16180 0.76 -0.9 738,629 + HMPREF1058_RS16180 0.76 -1.0 738,629 + HMPREF1058_RS16180 0.76 -0.3 738,654 - HMPREF1058_RS16180 0.79 -0.2 738,657 + HMPREF1058_RS16180 0.79 -2.0 738,733 - HMPREF1058_RS16180 0.89 +1.7 738,757 + +0.0 738,757 + -0.2 738,758 - -0.3 738,775 + +1.0 738,790 + +2.0 738,816 + -0.0 738,816 + -0.7 738,853 - +0.3 738,853 - -1.2 738,916 - HMPREF1058_RS16175 0.12 -0.2 738,946 + HMPREF1058_RS16175 0.16 -0.8 738,947 - HMPREF1058_RS16175 0.16 -0.7 738,947 - HMPREF1058_RS16175 0.16 -2.2 738,947 - HMPREF1058_RS16175 0.16 -1.4 738,970 + HMPREF1058_RS16175 0.19 -1.5 738,991 - HMPREF1058_RS16175 0.22 +0.4 739,006 + HMPREF1058_RS16175 0.24 -0.9 739,067 - HMPREF1058_RS16175 0.32 -0.2 739,113 - HMPREF1058_RS16175 0.38 +0.5 739,132 + HMPREF1058_RS16175 0.41 -0.3 739,132 + HMPREF1058_RS16175 0.41 -1.6 739,142 - HMPREF1058_RS16175 0.42 +0.7 739,144 + HMPREF1058_RS16175 0.42 +2.3 739,185 + HMPREF1058_RS16175 0.48 +1.2 739,232 - HMPREF1058_RS16175 0.54 -1.2 739,281 + HMPREF1058_RS16175 0.61 +0.7 739,282 - HMPREF1058_RS16175 0.61 -0.9 739,373 + HMPREF1058_RS16175 0.73 -1.3 739,373 + HMPREF1058_RS16175 0.73 -0.7 739,373 + HMPREF1058_RS16175 0.73 +2.3 739,376 + HMPREF1058_RS16175 0.74 +1.3 739,501 + -3.4 739,546 + +0.1 739,547 - -0.1 739,571 - -0.7 739,595 - +0.2 739,595 - -1.7 739,621 + -2.4 739,621 + -0.6 739,633 + +0.2 739,656 - -0.2 739,678 - +0.8 739,742 - HMPREF1058_RS16170 0.11 -0.6 739,765 + HMPREF1058_RS16170 0.12 +2.3 739,813 + HMPREF1058_RS16170 0.17 -1.1 739,892 - HMPREF1058_RS16170 0.23 +0.3 739,900 + HMPREF1058_RS16170 0.24 -0.2 739,949 - HMPREF1058_RS16170 0.28 +2.8 739,951 - HMPREF1058_RS16170 0.28 +0.0 739,957 + HMPREF1058_RS16170 0.29 +0.4 739,983 + HMPREF1058_RS16170 0.31 +0.9 739,985 + HMPREF1058_RS16170 0.31 +0.0 739,986 - HMPREF1058_RS16170 0.31 -0.9 739,990 - HMPREF1058_RS16170 0.32 +0.5 740,005 - HMPREF1058_RS16170 0.33 +2.5 740,020 - HMPREF1058_RS16170 0.34 +0.1 740,051 - HMPREF1058_RS16170 0.37 -0.1 740,060 - HMPREF1058_RS16170 0.37 +2.3 740,072 + HMPREF1058_RS16170 0.39 -0.2 740,072 + HMPREF1058_RS16170 0.39 -0.1 740,073 - HMPREF1058_RS16170 0.39 +0.2 740,183 - HMPREF1058_RS16170 0.48 +1.8 740,275 - HMPREF1058_RS16170 0.56 +2.3 740,350 + HMPREF1058_RS16170 0.62 +0.8 740,353 + HMPREF1058_RS16170 0.62 -2.9 740,359 - HMPREF1058_RS16170 0.63 +1.5 740,373 + HMPREF1058_RS16170 0.64 -1.5 740,389 - HMPREF1058_RS16170 0.65 +0.3 740,389 - HMPREF1058_RS16170 0.65 -0.2 740,393 + HMPREF1058_RS16170 0.66 +0.9 740,638 + HMPREF1058_RS16170 0.87 +1.4 740,673 + HMPREF1058_RS16170 0.89 +1.2 740,674 - HMPREF1058_RS16170 0.90 +0.8 740,764 - +1.1 740,767 + +1.0 740,768 - +0.3 740,769 + -1.1 740,782 + +0.7 740,783 - -2.6 740,813 - -1.4 740,816 - -1.6 741,012 + HMPREF1058_RS16165 0.28 +0.3 741,125 + HMPREF1058_RS16165 0.43 -0.8 741,143 + HMPREF1058_RS16165 0.45 +0.2 741,145 + HMPREF1058_RS16165 0.46 -0.7 741,216 - HMPREF1058_RS16165 0.55 -0.8 741,288 + HMPREF1058_RS16165 0.64 -1.2 741,350 + HMPREF1058_RS16165 0.72 -1.8 741,351 - HMPREF1058_RS16165 0.73 +0.3 741,387 - HMPREF1058_RS16165 0.77 +1.3 741,422 + HMPREF1058_RS16165 0.82 -0.7 741,422 + HMPREF1058_RS16165 0.82 -1.3 741,423 - HMPREF1058_RS16165 0.82 +0.8 741,423 - HMPREF1058_RS16165 0.82 -2.0 741,423 - HMPREF1058_RS16165 0.82 -2.2 741,424 + HMPREF1058_RS16165 0.82 -0.0 741,425 - HMPREF1058_RS16165 0.82 +1.1 741,452 + HMPREF1058_RS16165 0.86 -0.7 741,453 - HMPREF1058_RS16165 0.86 +2.3 741,531 + -0.5 741,531 + -0.7 741,531 + +0.6 741,536 - +0.8 741,601 + -1.4 741,631 + -1.0 741,744 - HMPREF1058_RS16160 0.16 +1.1
Or see this region's nucleotide sequence