Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15985

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15990 and HMPREF1058_RS15985 are separated by 328 nucleotidesHMPREF1058_RS15985 and HMPREF1058_RS15980 are separated by 124 nucleotides HMPREF1058_RS15990: HMPREF1058_RS15990 - molecular chaperone DnaK, at 788,513 to 790,429 _RS15990 HMPREF1058_RS15985: HMPREF1058_RS15985 - META domain-containing protein, at 790,758 to 791,549 _RS15985 HMPREF1058_RS15980: HMPREF1058_RS15980 - hypothetical protein, at 791,674 to 792,927 _RS15980 Position (kb) 790 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 790.600 kb on + strandat 790.600 kb on + strandat 790.611 kb on + strandat 790.611 kb on + strandat 790.612 kb on - strandat 790.623 kb on + strandat 790.624 kb on - strandat 790.624 kb on - strandat 790.625 kb on + strandat 790.660 kb on - strandat 790.675 kb on - strandat 790.679 kb on + strandat 790.680 kb on - strandat 790.688 kb on - strandat 790.715 kb on - strandat 790.759 kb on + strandat 790.760 kb on - strandat 790.807 kb on + strandat 790.809 kb on + strandat 790.814 kb on + strandat 790.865 kb on + strand, within HMPREF1058_RS15985at 790.901 kb on + strand, within HMPREF1058_RS15985at 790.902 kb on - strand, within HMPREF1058_RS15985at 790.971 kb on - strand, within HMPREF1058_RS15985at 791.159 kb on + strand, within HMPREF1058_RS15985at 791.160 kb on - strand, within HMPREF1058_RS15985at 791.163 kb on + strand, within HMPREF1058_RS15985at 791.164 kb on - strand, within HMPREF1058_RS15985at 791.164 kb on - strand, within HMPREF1058_RS15985at 791.164 kb on - strand, within HMPREF1058_RS15985at 791.297 kb on + strand, within HMPREF1058_RS15985at 791.298 kb on - strand, within HMPREF1058_RS15985at 791.337 kb on - strand, within HMPREF1058_RS15985at 791.337 kb on - strand, within HMPREF1058_RS15985at 791.337 kb on - strand, within HMPREF1058_RS15985at 791.342 kb on + strand, within HMPREF1058_RS15985at 791.360 kb on - strand, within HMPREF1058_RS15985at 791.364 kb on - strand, within HMPREF1058_RS15985at 791.376 kb on + strand, within HMPREF1058_RS15985at 791.377 kb on - strand, within HMPREF1058_RS15985at 791.409 kb on - strand, within HMPREF1058_RS15985at 791.475 kb on - strandat 791.496 kb on + strandat 791.496 kb on - strandat 791.497 kb on - strandat 791.497 kb on - strandat 791.578 kb on - strandat 791.619 kb on - strandat 791.655 kb on + strandat 791.658 kb on - strandat 791.660 kb on + strandat 791.696 kb on + strandat 791.728 kb on + strandat 791.728 kb on + strandat 791.729 kb on - strandat 791.729 kb on - strandat 791.745 kb on + strandat 791.746 kb on - strandat 791.746 kb on - strandat 791.747 kb on + strandat 791.748 kb on - strandat 791.758 kb on - strandat 791.905 kb on - strand, within HMPREF1058_RS15980at 792.032 kb on - strand, within HMPREF1058_RS15980at 792.046 kb on - strand, within HMPREF1058_RS15980at 792.155 kb on + strand, within HMPREF1058_RS15980at 792.156 kb on - strand, within HMPREF1058_RS15980at 792.157 kb on + strand, within HMPREF1058_RS15980at 792.158 kb on - strand, within HMPREF1058_RS15980at 792.159 kb on + strand, within HMPREF1058_RS15980at 792.159 kb on + strand, within HMPREF1058_RS15980at 792.159 kb on + strand, within HMPREF1058_RS15980at 792.160 kb on - strand, within HMPREF1058_RS15980at 792.160 kb on - strand, within HMPREF1058_RS15980at 792.160 kb on - strand, within HMPREF1058_RS15980at 792.160 kb on - strand, within HMPREF1058_RS15980at 792.176 kb on + strand, within HMPREF1058_RS15980at 792.180 kb on + strand, within HMPREF1058_RS15980at 792.180 kb on + strand, within HMPREF1058_RS15980at 792.180 kb on + strand, within HMPREF1058_RS15980at 792.181 kb on - strand, within HMPREF1058_RS15980at 792.182 kb on + strand, within HMPREF1058_RS15980at 792.183 kb on - strand, within HMPREF1058_RS15980at 792.183 kb on - strand, within HMPREF1058_RS15980at 792.229 kb on - strand, within HMPREF1058_RS15980at 792.229 kb on - strand, within HMPREF1058_RS15980at 792.242 kb on + strand, within HMPREF1058_RS15980at 792.319 kb on + strand, within HMPREF1058_RS15980at 792.319 kb on + strand, within HMPREF1058_RS15980at 792.336 kb on + strand, within HMPREF1058_RS15980at 792.375 kb on + strand, within HMPREF1058_RS15980at 792.463 kb on + strand, within HMPREF1058_RS15980at 792.481 kb on + strand, within HMPREF1058_RS15980at 792.544 kb on - strand, within HMPREF1058_RS15980

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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790,600 + -1.3
790,600 + +2.4
790,611 + -1.2
790,611 + -0.8
790,612 - -1.1
790,623 + -1.6
790,624 - -0.8
790,624 - +0.1
790,625 + -0.5
790,660 - -1.2
790,675 - -0.8
790,679 + +0.1
790,680 - -1.5
790,688 - -1.3
790,715 - +0.4
790,759 + -3.4
790,760 - +0.5
790,807 + +0.4
790,809 + +1.0
790,814 + +0.0
790,865 + HMPREF1058_RS15985 0.14 -1.8
790,901 + HMPREF1058_RS15985 0.18 +0.2
790,902 - HMPREF1058_RS15985 0.18 +1.0
790,971 - HMPREF1058_RS15985 0.27 +0.9
791,159 + HMPREF1058_RS15985 0.51 +2.4
791,160 - HMPREF1058_RS15985 0.51 -0.0
791,163 + HMPREF1058_RS15985 0.51 +2.1
791,164 - HMPREF1058_RS15985 0.51 +1.1
791,164 - HMPREF1058_RS15985 0.51 +0.7
791,164 - HMPREF1058_RS15985 0.51 +0.7
791,297 + HMPREF1058_RS15985 0.68 +0.3
791,298 - HMPREF1058_RS15985 0.68 -0.4
791,337 - HMPREF1058_RS15985 0.73 -0.1
791,337 - HMPREF1058_RS15985 0.73 +2.4
791,337 - HMPREF1058_RS15985 0.73 +0.4
791,342 + HMPREF1058_RS15985 0.74 -0.8
791,360 - HMPREF1058_RS15985 0.76 +0.7
791,364 - HMPREF1058_RS15985 0.77 +0.9
791,376 + HMPREF1058_RS15985 0.78 -1.0
791,377 - HMPREF1058_RS15985 0.78 +1.1
791,409 - HMPREF1058_RS15985 0.82 -0.0
791,475 - -0.2
791,496 + -0.6
791,496 - +0.4
791,497 - +0.4
791,497 - -0.5
791,578 - -1.6
791,619 - -1.6
791,655 + -0.5
791,658 - -0.5
791,660 + +0.0
791,696 + +0.6
791,728 + -1.7
791,728 + +0.2
791,729 - -2.2
791,729 - -0.2
791,745 + +0.3
791,746 - -1.2
791,746 - +0.3
791,747 + -0.6
791,748 - +0.5
791,758 - -0.8
791,905 - HMPREF1058_RS15980 0.18 -0.7
792,032 - HMPREF1058_RS15980 0.29 -1.0
792,046 - HMPREF1058_RS15980 0.30 -0.6
792,155 + HMPREF1058_RS15980 0.38 -0.6
792,156 - HMPREF1058_RS15980 0.38 -1.1
792,157 + HMPREF1058_RS15980 0.39 +0.0
792,158 - HMPREF1058_RS15980 0.39 +0.3
792,159 + HMPREF1058_RS15980 0.39 +0.9
792,159 + HMPREF1058_RS15980 0.39 +0.5
792,159 + HMPREF1058_RS15980 0.39 +0.3
792,160 - HMPREF1058_RS15980 0.39 -1.1
792,160 - HMPREF1058_RS15980 0.39 -0.5
792,160 - HMPREF1058_RS15980 0.39 -0.7
792,160 - HMPREF1058_RS15980 0.39 +0.7
792,176 + HMPREF1058_RS15980 0.40 +1.6
792,180 + HMPREF1058_RS15980 0.40 +0.6
792,180 + HMPREF1058_RS15980 0.40 -0.0
792,180 + HMPREF1058_RS15980 0.40 -0.6
792,181 - HMPREF1058_RS15980 0.40 -0.2
792,182 + HMPREF1058_RS15980 0.41 +1.1
792,183 - HMPREF1058_RS15980 0.41 -2.7
792,183 - HMPREF1058_RS15980 0.41 +1.0
792,229 - HMPREF1058_RS15980 0.44 -2.5
792,229 - HMPREF1058_RS15980 0.44 -0.2
792,242 + HMPREF1058_RS15980 0.45 +1.2
792,319 + HMPREF1058_RS15980 0.51 +0.2
792,319 + HMPREF1058_RS15980 0.51 +0.6
792,336 + HMPREF1058_RS15980 0.53 -0.1
792,375 + HMPREF1058_RS15980 0.56 +0.3
792,463 + HMPREF1058_RS15980 0.63 -0.4
792,481 + HMPREF1058_RS15980 0.64 -0.0
792,544 - HMPREF1058_RS15980 0.69 -0.2

Or see this region's nucleotide sequence