Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15840 and HMPREF1058_RS15835 are separated by 179 nucleotides HMPREF1058_RS15835 and HMPREF1058_RS15830 are separated by 23 nucleotides HMPREF1058_RS15830 and HMPREF1058_RS21585 overlap by 8 nucleotides HMPREF1058_RS21585 and HMPREF1058_RS15825 are separated by 95 nucleotides
HMPREF1058_RS15840: HMPREF1058_RS15840 - glycosyltransferase family 4 protein, at 822,116 to 823,204
_RS15840
HMPREF1058_RS15835: HMPREF1058_RS15835 - radical SAM protein, at 823,384 to 824,454
_RS15835
HMPREF1058_RS15830: HMPREF1058_RS15830 - hypothetical protein, at 824,478 to 824,984
_RS15830
HMPREF1058_RS21585: HMPREF1058_RS21585 - hypothetical protein, at 824,977 to 825,129
_RS21585
HMPREF1058_RS15825: HMPREF1058_RS15825 - glycosyltransferase, at 825,225 to 826,403
_RS15825
Position (kb) 823
824
825 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 822.390 kb on + strand, within HMPREF1058_RS15840 at 822.607 kb on + strand, within HMPREF1058_RS15840 at 822.608 kb on - strand, within HMPREF1058_RS15840 at 822.618 kb on + strand, within HMPREF1058_RS15840 at 822.618 kb on + strand, within HMPREF1058_RS15840 at 822.691 kb on + strand, within HMPREF1058_RS15840 at 822.691 kb on + strand, within HMPREF1058_RS15840 at 822.692 kb on - strand, within HMPREF1058_RS15840 at 822.694 kb on - strand, within HMPREF1058_RS15840 at 822.694 kb on - strand, within HMPREF1058_RS15840 at 822.764 kb on + strand, within HMPREF1058_RS15840 at 822.765 kb on - strand, within HMPREF1058_RS15840 at 822.849 kb on + strand, within HMPREF1058_RS15840 at 822.850 kb on - strand, within HMPREF1058_RS15840 at 822.900 kb on + strand, within HMPREF1058_RS15840 at 822.900 kb on + strand, within HMPREF1058_RS15840 at 822.901 kb on - strand, within HMPREF1058_RS15840 at 822.935 kb on - strand, within HMPREF1058_RS15840 at 822.941 kb on + strand, within HMPREF1058_RS15840 at 822.941 kb on + strand, within HMPREF1058_RS15840 at 823.026 kb on - strand, within HMPREF1058_RS15840 at 823.028 kb on - strand, within HMPREF1058_RS15840 at 823.028 kb on - strand, within HMPREF1058_RS15840 at 823.031 kb on + strand, within HMPREF1058_RS15840 at 823.075 kb on - strand, within HMPREF1058_RS15840 at 823.212 kb on - strand at 823.250 kb on - strand at 823.273 kb on + strand at 823.295 kb on - strand at 823.386 kb on - strand at 823.427 kb on - strand at 823.513 kb on + strand, within HMPREF1058_RS15835 at 823.514 kb on - strand, within HMPREF1058_RS15835 at 823.514 kb on - strand, within HMPREF1058_RS15835 at 823.517 kb on + strand, within HMPREF1058_RS15835 at 823.518 kb on - strand, within HMPREF1058_RS15835 at 823.521 kb on + strand, within HMPREF1058_RS15835 at 823.522 kb on - strand, within HMPREF1058_RS15835 at 823.589 kb on - strand, within HMPREF1058_RS15835 at 823.910 kb on + strand, within HMPREF1058_RS15835 at 824.061 kb on + strand, within HMPREF1058_RS15835 at 824.232 kb on - strand, within HMPREF1058_RS15835 at 824.368 kb on + strand at 824.368 kb on + strand at 824.369 kb on - strand at 824.371 kb on - strand at 824.373 kb on + strand at 824.373 kb on + strand at 824.403 kb on - strand at 824.454 kb on + strand at 824.578 kb on + strand, within HMPREF1058_RS15830 at 824.578 kb on + strand, within HMPREF1058_RS15830 at 824.705 kb on + strand, within HMPREF1058_RS15830 at 824.706 kb on - strand, within HMPREF1058_RS15830 at 824.709 kb on + strand, within HMPREF1058_RS15830 at 824.712 kb on + strand, within HMPREF1058_RS15830 at 824.713 kb on - strand, within HMPREF1058_RS15830 at 824.713 kb on - strand, within HMPREF1058_RS15830 at 824.714 kb on + strand, within HMPREF1058_RS15830 at 824.714 kb on + strand, within HMPREF1058_RS15830 at 824.715 kb on - strand, within HMPREF1058_RS15830 at 824.759 kb on + strand, within HMPREF1058_RS15830 at 824.795 kb on + strand, within HMPREF1058_RS15830 at 824.865 kb on + strand, within HMPREF1058_RS15830 at 824.907 kb on - strand, within HMPREF1058_RS15830 at 824.907 kb on - strand, within HMPREF1058_RS15830 at 824.919 kb on + strand, within HMPREF1058_RS15830 at 824.931 kb on - strand, within HMPREF1058_RS15830 at 824.958 kb on + strand at 825.165 kb on - strand at 825.207 kb on - strand at 825.207 kb on - strand at 825.209 kb on - strand at 825.209 kb on - strand at 825.212 kb on - strand at 825.329 kb on + strand at 825.329 kb on + strand at 825.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 822,390 + HMPREF1058_RS15840 0.25 -1.0 822,607 + HMPREF1058_RS15840 0.45 +0.6 822,608 - HMPREF1058_RS15840 0.45 -1.7 822,618 + HMPREF1058_RS15840 0.46 -0.4 822,618 + HMPREF1058_RS15840 0.46 -0.8 822,691 + HMPREF1058_RS15840 0.53 +1.5 822,691 + HMPREF1058_RS15840 0.53 -0.9 822,692 - HMPREF1058_RS15840 0.53 -0.6 822,694 - HMPREF1058_RS15840 0.53 +0.6 822,694 - HMPREF1058_RS15840 0.53 -0.1 822,764 + HMPREF1058_RS15840 0.60 -0.5 822,765 - HMPREF1058_RS15840 0.60 -0.5 822,849 + HMPREF1058_RS15840 0.67 -1.5 822,850 - HMPREF1058_RS15840 0.67 +0.7 822,900 + HMPREF1058_RS15840 0.72 -0.6 822,900 + HMPREF1058_RS15840 0.72 +2.0 822,901 - HMPREF1058_RS15840 0.72 -0.6 822,935 - HMPREF1058_RS15840 0.75 +0.4 822,941 + HMPREF1058_RS15840 0.76 -0.6 822,941 + HMPREF1058_RS15840 0.76 -1.1 823,026 - HMPREF1058_RS15840 0.84 -0.7 823,028 - HMPREF1058_RS15840 0.84 +0.5 823,028 - HMPREF1058_RS15840 0.84 -1.1 823,031 + HMPREF1058_RS15840 0.84 -1.9 823,075 - HMPREF1058_RS15840 0.88 -1.3 823,212 - +1.4 823,250 - +2.5 823,273 + -1.7 823,295 - -0.0 823,386 - +3.1 823,427 - -0.6 823,513 + HMPREF1058_RS15835 0.12 +0.9 823,514 - HMPREF1058_RS15835 0.12 +1.1 823,514 - HMPREF1058_RS15835 0.12 +0.9 823,517 + HMPREF1058_RS15835 0.12 +0.9 823,518 - HMPREF1058_RS15835 0.13 +2.4 823,521 + HMPREF1058_RS15835 0.13 +0.7 823,522 - HMPREF1058_RS15835 0.13 +1.5 823,589 - HMPREF1058_RS15835 0.19 +1.7 823,910 + HMPREF1058_RS15835 0.49 +0.1 824,061 + HMPREF1058_RS15835 0.63 +0.0 824,232 - HMPREF1058_RS15835 0.79 +0.4 824,368 + +0.9 824,368 + +0.0 824,369 - +0.2 824,371 - +0.6 824,373 + -1.5 824,373 + +2.5 824,403 - -0.6 824,454 + -0.2 824,578 + HMPREF1058_RS15830 0.20 -1.8 824,578 + HMPREF1058_RS15830 0.20 -1.7 824,705 + HMPREF1058_RS15830 0.45 -1.1 824,706 - HMPREF1058_RS15830 0.45 +0.9 824,709 + HMPREF1058_RS15830 0.46 -2.1 824,712 + HMPREF1058_RS15830 0.46 +0.4 824,713 - HMPREF1058_RS15830 0.46 +0.9 824,713 - HMPREF1058_RS15830 0.46 +1.3 824,714 + HMPREF1058_RS15830 0.47 +0.6 824,714 + HMPREF1058_RS15830 0.47 -0.9 824,715 - HMPREF1058_RS15830 0.47 +1.4 824,759 + HMPREF1058_RS15830 0.55 +0.9 824,795 + HMPREF1058_RS15830 0.63 -0.8 824,865 + HMPREF1058_RS15830 0.76 +0.3 824,907 - HMPREF1058_RS15830 0.85 +1.1 824,907 - HMPREF1058_RS15830 0.85 -0.1 824,919 + HMPREF1058_RS15830 0.87 -2.3 824,931 - HMPREF1058_RS15830 0.89 -0.1 824,958 + +0.7 825,165 - +1.2 825,207 - +0.3 825,207 - -0.3 825,209 - +0.4 825,209 - +0.0 825,212 - -0.7 825,329 + +0.3 825,329 + +1.0 825,330 - +1.1
Or see this region's nucleotide sequence