Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15750 and HMPREF1058_RS15745 are separated by 105 nucleotides HMPREF1058_RS15745 and HMPREF1058_RS15740 are separated by 155 nucleotides HMPREF1058_RS15740 and HMPREF1058_RS15735 are separated by 21 nucleotides HMPREF1058_RS15735 and HMPREF1058_RS15730 are separated by 7 nucleotides
HMPREF1058_RS15750: HMPREF1058_RS15750 - glucosaminidase domain-containing protein, at 845,393 to 846,289
_RS15750
HMPREF1058_RS15745: HMPREF1058_RS15745 - hypothetical protein, at 846,395 to 847,036
_RS15745
HMPREF1058_RS15740: HMPREF1058_RS15740 - hypothetical protein, at 847,192 to 847,740
_RS15740
HMPREF1058_RS15735: HMPREF1058_RS15735 - hypothetical protein, at 847,762 to 848,124
_RS15735
HMPREF1058_RS15730: HMPREF1058_RS15730 - RNA polymerase sigma factor, at 848,132 to 848,668
_RS15730
Position (kb) 847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 846.235 kb on + strand at 846.239 kb on + strand at 846.239 kb on + strand at 846.266 kb on - strand at 846.289 kb on + strand at 846.292 kb on - strand at 846.316 kb on + strand at 846.316 kb on + strand at 846.317 kb on - strand at 846.330 kb on + strand at 846.331 kb on - strand at 846.331 kb on - strand at 846.331 kb on - strand at 846.332 kb on + strand at 846.333 kb on - strand at 846.333 kb on - strand at 846.333 kb on - strand at 846.335 kb on - strand at 846.383 kb on + strand at 846.454 kb on + strand at 846.470 kb on + strand, within HMPREF1058_RS15745 at 846.569 kb on - strand, within HMPREF1058_RS15745 at 846.570 kb on + strand, within HMPREF1058_RS15745 at 846.598 kb on + strand, within HMPREF1058_RS15745 at 846.694 kb on + strand, within HMPREF1058_RS15745 at 846.748 kb on + strand, within HMPREF1058_RS15745 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.851 kb on + strand, within HMPREF1058_RS15745 at 846.854 kb on + strand, within HMPREF1058_RS15745 at 846.872 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.875 kb on - strand, within HMPREF1058_RS15745 at 846.924 kb on + strand, within HMPREF1058_RS15745 at 846.941 kb on + strand, within HMPREF1058_RS15745 at 846.946 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.962 kb on - strand, within HMPREF1058_RS15745 at 846.989 kb on + strand at 847.063 kb on + strand at 847.066 kb on + strand at 847.066 kb on + strand at 847.067 kb on - strand at 847.067 kb on - strand at 847.088 kb on - strand at 847.193 kb on + strand at 847.219 kb on - strand at 847.306 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.530 kb on - strand, within HMPREF1058_RS15740 at 847.591 kb on - strand, within HMPREF1058_RS15740 at 847.607 kb on - strand, within HMPREF1058_RS15740 at 847.996 kb on - strand, within HMPREF1058_RS15735 at 848.008 kb on - strand, within HMPREF1058_RS15735 at 848.074 kb on - strand, within HMPREF1058_RS15735 at 848.141 kb on + strand at 848.142 kb on - strand at 848.148 kb on + strand at 848.173 kb on - strand at 848.232 kb on + strand, within HMPREF1058_RS15730 at 848.247 kb on + strand, within HMPREF1058_RS15730 at 848.331 kb on + strand, within HMPREF1058_RS15730 at 848.332 kb on - strand, within HMPREF1058_RS15730 at 848.340 kb on + strand, within HMPREF1058_RS15730 at 848.360 kb on - strand, within HMPREF1058_RS15730 at 848.414 kb on - strand, within HMPREF1058_RS15730 at 848.553 kb on - strand, within HMPREF1058_RS15730 at 848.578 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.611 kb on + strand, within HMPREF1058_RS15730 at 848.639 kb on + strand at 848.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 846,235 + -0.5 846,239 + -0.9 846,239 + -1.3 846,266 - +0.8 846,289 + -0.5 846,292 - +0.1 846,316 + -1.1 846,316 + -2.6 846,317 - -0.7 846,330 + -0.7 846,331 - -0.5 846,331 - +0.6 846,331 - -0.3 846,332 + +1.6 846,333 - +0.3 846,333 - -1.7 846,333 - -1.2 846,335 - +0.5 846,383 + -1.0 846,454 + +0.4 846,470 + HMPREF1058_RS15745 0.12 -1.3 846,569 - HMPREF1058_RS15745 0.27 -0.1 846,570 + HMPREF1058_RS15745 0.27 +1.5 846,598 + HMPREF1058_RS15745 0.32 -2.2 846,694 + HMPREF1058_RS15745 0.47 -0.2 846,748 + HMPREF1058_RS15745 0.55 +0.8 846,829 - HMPREF1058_RS15745 0.68 -1.4 846,829 - HMPREF1058_RS15745 0.68 +0.3 846,851 + HMPREF1058_RS15745 0.71 -1.7 846,854 + HMPREF1058_RS15745 0.71 -1.1 846,872 + HMPREF1058_RS15745 0.74 -1.7 846,874 + HMPREF1058_RS15745 0.75 -0.8 846,874 + HMPREF1058_RS15745 0.75 +1.5 846,875 - HMPREF1058_RS15745 0.75 +0.5 846,924 + HMPREF1058_RS15745 0.82 +0.5 846,941 + HMPREF1058_RS15745 0.85 -0.2 846,946 + HMPREF1058_RS15745 0.86 -0.6 846,957 + HMPREF1058_RS15745 0.88 -0.4 846,957 + HMPREF1058_RS15745 0.88 -0.2 846,961 + HMPREF1058_RS15745 0.88 +1.3 846,961 + HMPREF1058_RS15745 0.88 -1.0 846,962 - HMPREF1058_RS15745 0.88 +0.3 846,989 + -1.8 847,063 + +1.7 847,066 + +0.1 847,066 + -0.7 847,067 - -0.1 847,067 - -0.3 847,088 - -0.9 847,193 + -3.4 847,219 - -0.5 847,306 - HMPREF1058_RS15740 0.21 -0.8 847,356 - HMPREF1058_RS15740 0.30 +2.0 847,356 - HMPREF1058_RS15740 0.30 +0.7 847,530 - HMPREF1058_RS15740 0.62 +1.4 847,591 - HMPREF1058_RS15740 0.73 +1.4 847,607 - HMPREF1058_RS15740 0.76 +2.6 847,996 - HMPREF1058_RS15735 0.64 -0.1 848,008 - HMPREF1058_RS15735 0.68 -0.7 848,074 - HMPREF1058_RS15735 0.86 -0.4 848,141 + -0.2 848,142 - -1.5 848,148 + -1.0 848,173 - +2.3 848,232 + HMPREF1058_RS15730 0.19 +0.3 848,247 + HMPREF1058_RS15730 0.21 +0.5 848,331 + HMPREF1058_RS15730 0.37 -1.0 848,332 - HMPREF1058_RS15730 0.37 +0.0 848,340 + HMPREF1058_RS15730 0.39 +0.1 848,360 - HMPREF1058_RS15730 0.42 -0.2 848,414 - HMPREF1058_RS15730 0.53 -0.7 848,553 - HMPREF1058_RS15730 0.78 -3.7 848,578 - HMPREF1058_RS15730 0.83 -0.9 848,580 - HMPREF1058_RS15730 0.83 -0.6 848,580 - HMPREF1058_RS15730 0.83 -1.6 848,611 + HMPREF1058_RS15730 0.89 +0.9 848,639 + -1.2 848,640 - -0.9
Or see this region's nucleotide sequence