Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15555 and HMPREF1058_RS15550 are separated by 230 nucleotides HMPREF1058_RS15550 and HMPREF1058_RS15545 are separated by 10 nucleotides
HMPREF1058_RS15555: HMPREF1058_RS15555 - DUF3874 domain-containing protein, at 889,271 to 891,361
_RS15555
HMPREF1058_RS15550: HMPREF1058_RS15550 - thioredoxin family protein, at 891,592 to 891,852
_RS15550
HMPREF1058_RS15545: HMPREF1058_RS15545 - 50S ribosomal protein L11 methyltransferase, at 891,863 to 892,708
_RS15545
Position (kb) 891
892 Strain fitness (log2 ratio) -1
0
1
2 at 890.644 kb on - strand, within HMPREF1058_RS15555 at 890.678 kb on + strand, within HMPREF1058_RS15555 at 890.813 kb on + strand, within HMPREF1058_RS15555 at 890.974 kb on + strand, within HMPREF1058_RS15555 at 890.974 kb on + strand, within HMPREF1058_RS15555 at 891.036 kb on - strand, within HMPREF1058_RS15555 at 891.054 kb on + strand, within HMPREF1058_RS15555 at 891.054 kb on + strand, within HMPREF1058_RS15555 at 891.136 kb on - strand, within HMPREF1058_RS15555 at 891.227 kb on + strand at 891.259 kb on + strand at 891.336 kb on + strand at 891.336 kb on + strand at 891.337 kb on - strand at 891.339 kb on - strand at 891.383 kb on - strand at 891.383 kb on - strand at 891.415 kb on - strand at 891.438 kb on + strand at 891.449 kb on + strand at 891.477 kb on - strand at 891.487 kb on - strand at 891.694 kb on - strand, within HMPREF1058_RS15550 at 891.754 kb on + strand, within HMPREF1058_RS15550 at 891.755 kb on - strand, within HMPREF1058_RS15550 at 891.946 kb on - strand at 891.963 kb on + strand, within HMPREF1058_RS15545 at 891.989 kb on + strand, within HMPREF1058_RS15545 at 891.990 kb on - strand, within HMPREF1058_RS15545 at 891.990 kb on - strand, within HMPREF1058_RS15545 at 892.071 kb on - strand, within HMPREF1058_RS15545 at 892.581 kb on + strand, within HMPREF1058_RS15545 at 892.588 kb on - strand, within HMPREF1058_RS15545 at 892.598 kb on + strand, within HMPREF1058_RS15545 at 892.602 kb on + strand, within HMPREF1058_RS15545 at 892.602 kb on + strand, within HMPREF1058_RS15545 at 892.657 kb on - strand at 892.706 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 890,644 - HMPREF1058_RS15555 0.66 -0.7 890,678 + HMPREF1058_RS15555 0.67 -1.0 890,813 + HMPREF1058_RS15555 0.74 -0.5 890,974 + HMPREF1058_RS15555 0.81 -0.8 890,974 + HMPREF1058_RS15555 0.81 +0.2 891,036 - HMPREF1058_RS15555 0.84 +0.1 891,054 + HMPREF1058_RS15555 0.85 -0.2 891,054 + HMPREF1058_RS15555 0.85 -0.8 891,136 - HMPREF1058_RS15555 0.89 +0.6 891,227 + -0.7 891,259 + -1.0 891,336 + +1.4 891,336 + -1.5 891,337 - -0.2 891,339 - -0.9 891,383 - -1.2 891,383 - +1.3 891,415 - -0.2 891,438 + -0.1 891,449 + +0.0 891,477 - -1.0 891,487 - +1.9 891,694 - HMPREF1058_RS15550 0.39 +1.3 891,754 + HMPREF1058_RS15550 0.62 -0.1 891,755 - HMPREF1058_RS15550 0.62 -0.2 891,946 - -0.4 891,963 + HMPREF1058_RS15545 0.12 +0.8 891,989 + HMPREF1058_RS15545 0.15 -0.3 891,990 - HMPREF1058_RS15545 0.15 +2.3 891,990 - HMPREF1058_RS15545 0.15 -0.3 892,071 - HMPREF1058_RS15545 0.25 +0.7 892,581 + HMPREF1058_RS15545 0.85 +0.3 892,588 - HMPREF1058_RS15545 0.86 +0.3 892,598 + HMPREF1058_RS15545 0.87 -0.7 892,602 + HMPREF1058_RS15545 0.87 -0.4 892,602 + HMPREF1058_RS15545 0.87 -0.1 892,657 - -1.7 892,706 + +1.1
Or see this region's nucleotide sequence