Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15340 and HMPREF1058_RS15335 are separated by 142 nucleotides HMPREF1058_RS15335 and HMPREF1058_RS15330 are separated by 35 nucleotides HMPREF1058_RS15330 and HMPREF1058_RS15325 are separated by 399 nucleotides
HMPREF1058_RS15340: HMPREF1058_RS15340 - OmpA family protein, at 945,013 to 946,149
_RS15340
HMPREF1058_RS15335: HMPREF1058_RS15335 - hypothetical protein, at 946,292 to 946,951
_RS15335
HMPREF1058_RS15330: HMPREF1058_RS15330 - helix-turn-helix transcriptional regulator, at 946,987 to 947,835
_RS15330
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 946.126 kb on + strand at 946.126 kb on + strand at 946.127 kb on - strand at 946.198 kb on + strand at 946.199 kb on - strand at 946.200 kb on + strand at 946.201 kb on - strand at 946.289 kb on - strand at 946.342 kb on + strand at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.434 kb on - strand, within HMPREF1058_RS15335 at 946.443 kb on - strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.580 kb on + strand, within HMPREF1058_RS15335 at 946.651 kb on + strand, within HMPREF1058_RS15335 at 946.652 kb on - strand, within HMPREF1058_RS15335 at 946.653 kb on + strand, within HMPREF1058_RS15335 at 946.654 kb on - strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.783 kb on + strand, within HMPREF1058_RS15335 at 946.784 kb on - strand, within HMPREF1058_RS15335 at 946.788 kb on - strand, within HMPREF1058_RS15335 at 946.879 kb on + strand, within HMPREF1058_RS15335 at 946.880 kb on - strand, within HMPREF1058_RS15335 at 946.941 kb on - strand at 946.944 kb on + strand at 946.989 kb on - strand at 947.045 kb on + strand at 947.105 kb on - strand, within HMPREF1058_RS15330 at 947.226 kb on - strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.401 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.572 kb on - strand, within HMPREF1058_RS15330 at 947.658 kb on + strand, within HMPREF1058_RS15330 at 947.721 kb on + strand, within HMPREF1058_RS15330 at 947.737 kb on + strand, within HMPREF1058_RS15330 at 947.738 kb on - strand, within HMPREF1058_RS15330 at 947.766 kb on + strand at 947.871 kb on + strand at 947.871 kb on + strand at 947.872 kb on - strand at 947.961 kb on + strand at 947.962 kb on - strand at 947.976 kb on + strand at 947.995 kb on + strand at 947.996 kb on - strand at 948.036 kb on + strand at 948.037 kb on - strand at 948.047 kb on - strand at 948.068 kb on - strand at 948.124 kb on - strand at 948.128 kb on - strand at 948.139 kb on - strand at 948.139 kb on - strand at 948.140 kb on + strand at 948.140 kb on + strand at 948.230 kb on - strand at 948.331 kb on - strand at 948.521 kb on + strand at 948.522 kb on - strand at 948.701 kb on + strand, within HMPREF1058_RS15325 at 948.701 kb on + strand, within HMPREF1058_RS15325
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 946,126 + -0.4 946,126 + +0.5 946,127 - +0.0 946,198 + +0.4 946,199 - -2.2 946,200 + -1.6 946,201 - +0.7 946,289 - -1.4 946,342 + -1.5 946,365 + HMPREF1058_RS15335 0.11 -0.7 946,365 + HMPREF1058_RS15335 0.11 +2.4 946,434 - HMPREF1058_RS15335 0.22 -0.2 946,443 - HMPREF1058_RS15335 0.23 -1.0 946,465 + HMPREF1058_RS15335 0.26 +1.0 946,465 + HMPREF1058_RS15335 0.26 -1.1 946,580 + HMPREF1058_RS15335 0.44 -2.1 946,651 + HMPREF1058_RS15335 0.54 -2.9 946,652 - HMPREF1058_RS15335 0.55 -3.3 946,653 + HMPREF1058_RS15335 0.55 -1.0 946,654 - HMPREF1058_RS15335 0.55 +0.2 946,655 + HMPREF1058_RS15335 0.55 +0.2 946,655 + HMPREF1058_RS15335 0.55 -1.6 946,732 + HMPREF1058_RS15335 0.67 +3.2 946,732 + HMPREF1058_RS15335 0.67 -0.4 946,732 + HMPREF1058_RS15335 0.67 -0.3 946,733 - HMPREF1058_RS15335 0.67 -0.9 946,733 - HMPREF1058_RS15335 0.67 -2.3 946,783 + HMPREF1058_RS15335 0.74 +0.6 946,784 - HMPREF1058_RS15335 0.75 -0.5 946,788 - HMPREF1058_RS15335 0.75 -0.9 946,879 + HMPREF1058_RS15335 0.89 +0.2 946,880 - HMPREF1058_RS15335 0.89 +0.2 946,941 - -2.8 946,944 + -0.6 946,989 - +3.4 947,045 + +1.4 947,105 - HMPREF1058_RS15330 0.14 +0.5 947,226 - HMPREF1058_RS15330 0.28 +1.0 947,394 + HMPREF1058_RS15330 0.48 -0.8 947,394 + HMPREF1058_RS15330 0.48 +0.9 947,395 - HMPREF1058_RS15330 0.48 +0.3 947,395 - HMPREF1058_RS15330 0.48 -0.8 947,401 - HMPREF1058_RS15330 0.49 +1.0 947,408 - HMPREF1058_RS15330 0.50 +4.7 947,408 - HMPREF1058_RS15330 0.50 +0.8 947,540 - HMPREF1058_RS15330 0.65 +3.6 947,540 - HMPREF1058_RS15330 0.65 -0.9 947,540 - HMPREF1058_RS15330 0.65 +3.9 947,572 - HMPREF1058_RS15330 0.69 +0.0 947,658 + HMPREF1058_RS15330 0.79 -1.3 947,721 + HMPREF1058_RS15330 0.86 -0.8 947,737 + HMPREF1058_RS15330 0.88 -0.8 947,738 - HMPREF1058_RS15330 0.88 +1.1 947,766 + -0.6 947,871 + +1.4 947,871 + +2.4 947,872 - +0.0 947,961 + +0.4 947,962 - -0.3 947,976 + -1.7 947,995 + +0.0 947,996 - +0.3 948,036 + -0.2 948,037 - +1.1 948,047 - +0.8 948,068 - +2.2 948,124 - +0.7 948,128 - +2.6 948,139 - +0.4 948,139 - -1.0 948,140 + -1.2 948,140 + -0.2 948,230 - +1.8 948,331 - +1.8 948,521 + +1.6 948,522 - +1.8 948,701 + HMPREF1058_RS15325 0.13 -0.6 948,701 + HMPREF1058_RS15325 0.13 -2.2
Or see this region's nucleotide sequence