Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15325 and HMPREF1058_RS15320 are separated by 57 nucleotides HMPREF1058_RS15320 and HMPREF1058_RS15315 are separated by 81 nucleotides
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127
_RS15320
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 950.931 kb on - strand, within HMPREF1058_RS15325 at 950.933 kb on - strand, within HMPREF1058_RS15325 at 950.976 kb on + strand, within HMPREF1058_RS15325 at 951.015 kb on + strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.037 kb on - strand, within HMPREF1058_RS15325 at 951.054 kb on - strand, within HMPREF1058_RS15325 at 951.096 kb on + strand, within HMPREF1058_RS15325 at 951.100 kb on - strand, within HMPREF1058_RS15325 at 951.101 kb on + strand, within HMPREF1058_RS15325 at 951.115 kb on - strand, within HMPREF1058_RS15325 at 951.228 kb on - strand, within HMPREF1058_RS15325 at 951.402 kb on + strand, within HMPREF1058_RS15325 at 951.578 kb on - strand at 951.582 kb on + strand at 951.772 kb on + strand at 951.773 kb on - strand at 951.801 kb on - strand at 951.816 kb on + strand at 951.820 kb on + strand at 951.821 kb on - strand at 951.825 kb on - strand at 951.867 kb on - strand at 951.867 kb on - strand at 951.872 kb on - strand at 951.927 kb on - strand at 952.003 kb on - strand, within HMPREF1058_RS15320 at 952.133 kb on - strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.142 kb on + strand, within HMPREF1058_RS15320 at 952.143 kb on - strand, within HMPREF1058_RS15320 at 952.300 kb on - strand, within HMPREF1058_RS15320 at 952.464 kb on + strand, within HMPREF1058_RS15320 at 952.465 kb on - strand, within HMPREF1058_RS15320 at 952.501 kb on - strand, within HMPREF1058_RS15320 at 952.698 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.795 kb on - strand, within HMPREF1058_RS15320 at 952.829 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.923 kb on - strand, within HMPREF1058_RS15320 at 952.977 kb on + strand, within HMPREF1058_RS15320 at 953.074 kb on + strand at 953.075 kb on - strand at 953.121 kb on - strand at 953.149 kb on - strand at 953.166 kb on - strand at 953.168 kb on + strand at 953.195 kb on - strand at 953.267 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 950,931 - HMPREF1058_RS15325 0.75 -1.1 950,933 - HMPREF1058_RS15325 0.75 -0.2 950,976 + HMPREF1058_RS15325 0.77 +0.2 951,015 + HMPREF1058_RS15325 0.78 -1.7 951,016 - HMPREF1058_RS15325 0.78 +0.7 951,016 - HMPREF1058_RS15325 0.78 +0.2 951,037 - HMPREF1058_RS15325 0.78 +1.8 951,054 - HMPREF1058_RS15325 0.79 +0.9 951,096 + HMPREF1058_RS15325 0.80 +0.1 951,100 - HMPREF1058_RS15325 0.80 +0.2 951,101 + HMPREF1058_RS15325 0.80 -0.3 951,115 - HMPREF1058_RS15325 0.80 +1.1 951,228 - HMPREF1058_RS15325 0.84 +0.6 951,402 + HMPREF1058_RS15325 0.88 -0.1 951,578 - -0.8 951,582 + +0.4 951,772 + +0.8 951,773 - -1.5 951,801 - -0.5 951,816 + +1.4 951,820 + +1.4 951,821 - +2.4 951,825 - +2.4 951,867 - -0.6 951,867 - +0.9 951,872 - +0.1 951,927 - +1.0 952,003 - HMPREF1058_RS15320 0.10 +1.4 952,133 - HMPREF1058_RS15320 0.21 +3.8 952,136 + HMPREF1058_RS15320 0.21 -0.5 952,136 + HMPREF1058_RS15320 0.21 -0.9 952,142 + HMPREF1058_RS15320 0.21 -0.3 952,143 - HMPREF1058_RS15320 0.21 +5.8 952,300 - HMPREF1058_RS15320 0.34 -1.4 952,464 + HMPREF1058_RS15320 0.47 -1.7 952,465 - HMPREF1058_RS15320 0.47 -0.2 952,501 - HMPREF1058_RS15320 0.50 -0.4 952,698 - HMPREF1058_RS15320 0.66 +1.4 952,730 - HMPREF1058_RS15320 0.68 +0.8 952,730 - HMPREF1058_RS15320 0.68 +1.1 952,760 - HMPREF1058_RS15320 0.71 +1.2 952,760 - HMPREF1058_RS15320 0.71 -0.5 952,795 - HMPREF1058_RS15320 0.73 -0.6 952,829 + HMPREF1058_RS15320 0.76 +0.0 952,922 + HMPREF1058_RS15320 0.84 -1.8 952,922 + HMPREF1058_RS15320 0.84 -0.3 952,923 - HMPREF1058_RS15320 0.84 -0.3 952,977 + HMPREF1058_RS15320 0.88 +1.9 953,074 + -1.3 953,075 - +0.8 953,121 - +0.7 953,149 - +1.5 953,166 - +1.0 953,168 + -0.1 953,195 - +2.2 953,267 - +2.8 953,434 + HMPREF1058_RS15315 0.23 -1.7 953,556 + HMPREF1058_RS15315 0.36 -0.6 953,565 - HMPREF1058_RS15315 0.37 +1.3 953,627 - HMPREF1058_RS15315 0.43 -2.5 953,744 + HMPREF1058_RS15315 0.55 -0.0 953,744 + HMPREF1058_RS15315 0.55 -0.5 953,846 + HMPREF1058_RS15315 0.66 +0.4 954,112 - -1.0 954,112 - -0.0 954,118 + -0.2 954,119 - -0.1 954,119 - -1.2
Or see this region's nucleotide sequence