Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15290 and HMPREF1058_RS15285 are separated by 7 nucleotides HMPREF1058_RS15285 and HMPREF1058_RS15280 are separated by 231 nucleotides HMPREF1058_RS15280 and HMPREF1058_RS15275 are separated by 87 nucleotides HMPREF1058_RS15275 and HMPREF1058_RS15270 are separated by 218 nucleotides
HMPREF1058_RS15290: HMPREF1058_RS15290 - hypothetical protein, at 959,267 to 960,478
_RS15290
HMPREF1058_RS15285: HMPREF1058_RS15285 - hypothetical protein, at 960,486 to 960,938
_RS15285
HMPREF1058_RS15280: HMPREF1058_RS15280 - tRNA-Ser, at 961,170 to 961,257
_RS15280
HMPREF1058_RS15275: HMPREF1058_RS15275 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 961,345 to 961,800
_RS15275
HMPREF1058_RS15270: HMPREF1058_RS15270 - 7-cyano-7-deazaguanine synthase QueC, at 962,019 to 962,690
_RS15270
Position (kb) 961
962 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 960.212 kb on - strand, within HMPREF1058_RS15290 at 960.220 kb on - strand, within HMPREF1058_RS15290 at 960.226 kb on + strand, within HMPREF1058_RS15290 at 960.397 kb on + strand at 960.398 kb on - strand at 960.452 kb on + strand at 960.486 kb on - strand at 960.497 kb on - strand at 960.589 kb on - strand, within HMPREF1058_RS15285 at 960.595 kb on - strand, within HMPREF1058_RS15285 at 960.626 kb on + strand, within HMPREF1058_RS15285 at 960.626 kb on + strand, within HMPREF1058_RS15285 at 960.648 kb on + strand, within HMPREF1058_RS15285 at 960.690 kb on - strand, within HMPREF1058_RS15285 at 960.690 kb on - strand, within HMPREF1058_RS15285 at 960.704 kb on + strand, within HMPREF1058_RS15285 at 960.705 kb on - strand, within HMPREF1058_RS15285 at 960.705 kb on - strand, within HMPREF1058_RS15285 at 960.710 kb on + strand, within HMPREF1058_RS15285 at 960.728 kb on + strand, within HMPREF1058_RS15285 at 960.749 kb on + strand, within HMPREF1058_RS15285 at 960.794 kb on - strand, within HMPREF1058_RS15285 at 960.800 kb on - strand, within HMPREF1058_RS15285 at 960.808 kb on + strand, within HMPREF1058_RS15285 at 960.814 kb on - strand, within HMPREF1058_RS15285 at 960.853 kb on - strand, within HMPREF1058_RS15285 at 960.899 kb on - strand at 960.939 kb on + strand at 960.940 kb on - strand at 960.970 kb on - strand at 960.970 kb on - strand at 960.974 kb on - strand at 960.988 kb on + strand at 960.989 kb on - strand at 960.990 kb on + strand at 960.991 kb on - strand at 961.009 kb on - strand at 961.023 kb on + strand at 961.026 kb on + strand at 961.028 kb on - strand at 961.033 kb on + strand at 961.034 kb on - strand at 961.036 kb on + strand at 961.056 kb on + strand at 961.057 kb on - strand at 961.088 kb on - strand at 961.109 kb on - strand at 961.109 kb on - strand at 961.144 kb on + strand at 961.149 kb on - strand at 961.213 kb on - strand, within HMPREF1058_RS15280 at 961.213 kb on - strand, within HMPREF1058_RS15280 at 961.340 kb on + strand at 961.341 kb on - strand at 961.346 kb on + strand at 961.359 kb on + strand at 961.392 kb on + strand, within HMPREF1058_RS15275 at 961.393 kb on - strand, within HMPREF1058_RS15275 at 961.413 kb on + strand, within HMPREF1058_RS15275 at 961.414 kb on - strand, within HMPREF1058_RS15275 at 961.472 kb on + strand, within HMPREF1058_RS15275 at 961.473 kb on - strand, within HMPREF1058_RS15275 at 961.554 kb on + strand, within HMPREF1058_RS15275 at 961.555 kb on - strand, within HMPREF1058_RS15275 at 961.562 kb on + strand, within HMPREF1058_RS15275 at 961.644 kb on + strand, within HMPREF1058_RS15275 at 961.677 kb on + strand, within HMPREF1058_RS15275 at 961.907 kb on + strand at 961.908 kb on - strand at 961.992 kb on + strand at 961.992 kb on + strand at 962.219 kb on + strand, within HMPREF1058_RS15270
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 960,212 - HMPREF1058_RS15290 0.78 +0.6 960,220 - HMPREF1058_RS15290 0.79 +2.4 960,226 + HMPREF1058_RS15290 0.79 -0.2 960,397 + +0.7 960,398 - -1.1 960,452 + -0.2 960,486 - +0.9 960,497 - -0.8 960,589 - HMPREF1058_RS15285 0.23 +0.3 960,595 - HMPREF1058_RS15285 0.24 +1.6 960,626 + HMPREF1058_RS15285 0.31 +0.0 960,626 + HMPREF1058_RS15285 0.31 -0.2 960,648 + HMPREF1058_RS15285 0.36 -0.8 960,690 - HMPREF1058_RS15285 0.45 -0.3 960,690 - HMPREF1058_RS15285 0.45 +0.5 960,704 + HMPREF1058_RS15285 0.48 -0.5 960,705 - HMPREF1058_RS15285 0.48 -1.4 960,705 - HMPREF1058_RS15285 0.48 -0.3 960,710 + HMPREF1058_RS15285 0.49 -0.0 960,728 + HMPREF1058_RS15285 0.53 -0.0 960,749 + HMPREF1058_RS15285 0.58 +1.4 960,794 - HMPREF1058_RS15285 0.68 +0.4 960,800 - HMPREF1058_RS15285 0.69 +1.4 960,808 + HMPREF1058_RS15285 0.71 +0.5 960,814 - HMPREF1058_RS15285 0.72 +0.8 960,853 - HMPREF1058_RS15285 0.81 -2.4 960,899 - -0.8 960,939 + +1.2 960,940 - +0.8 960,970 - -0.6 960,970 - +1.0 960,974 - +0.3 960,988 + -0.1 960,989 - -0.3 960,990 + -0.7 960,991 - +1.4 961,009 - -0.0 961,023 + +0.5 961,026 + -0.1 961,028 - +1.2 961,033 + -1.1 961,034 - +0.4 961,036 + +0.9 961,056 + -0.6 961,057 - +0.3 961,088 - +0.2 961,109 - +0.3 961,109 - -0.5 961,144 + -0.3 961,149 - +0.7 961,213 - HMPREF1058_RS15280 0.49 +2.3 961,213 - HMPREF1058_RS15280 0.49 -0.4 961,340 + -2.5 961,341 - -1.2 961,346 + -0.9 961,359 + -0.6 961,392 + HMPREF1058_RS15275 0.10 +0.1 961,393 - HMPREF1058_RS15275 0.11 +1.7 961,413 + HMPREF1058_RS15275 0.15 -1.1 961,414 - HMPREF1058_RS15275 0.15 +0.7 961,472 + HMPREF1058_RS15275 0.28 -2.5 961,473 - HMPREF1058_RS15275 0.28 -0.6 961,554 + HMPREF1058_RS15275 0.46 -0.4 961,555 - HMPREF1058_RS15275 0.46 -0.3 961,562 + HMPREF1058_RS15275 0.48 +0.4 961,644 + HMPREF1058_RS15275 0.66 -0.3 961,677 + HMPREF1058_RS15275 0.73 +3.2 961,907 + +0.0 961,908 - -0.4 961,992 + +1.1 961,992 + -1.0 962,219 + HMPREF1058_RS15270 0.30 -1.9
Or see this region's nucleotide sequence