Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15060

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,027,917	+		HMPREF1058_RS15065	0.53	-2.0
1,027,918	-		HMPREF1058_RS15065	0.53	-0.3
1,027,918	-		HMPREF1058_RS15065	0.53	+0.1
1,027,918	-		HMPREF1058_RS15065	0.53	-1.6
1,028,021	-		HMPREF1058_RS15065	0.61	-0.9
1,028,077	+		HMPREF1058_RS15065	0.65	+1.2
1,028,078	-		HMPREF1058_RS15065	0.65	+1.4
1,028,081	-		HMPREF1058_RS15065	0.66	+0.5
1,028,086	+		HMPREF1058_RS15065	0.66	-0.2
1,028,097	+		HMPREF1058_RS15065	0.67	-1.6
1,028,098	-		HMPREF1058_RS15065	0.67	+0.1
1,028,324	-		HMPREF1058_RS15065	0.84	+0.8
1,028,386	+		HMPREF1058_RS15065	0.89	-0.2
1,028,388	+		HMPREF1058_RS15065	0.89	-1.3
1,028,388	+		HMPREF1058_RS15065	0.89	+0.3
1,028,452	+				+0.7
1,028,507	+				-1.0
1,028,507	+				-1.0
1,028,507	+				-1.0
1,028,508	-				-0.4
1,028,508	-				+0.0
1,028,532	+				-1.6
1,028,532	+				+0.3
1,028,532	+				+0.0
1,028,533	-				-1.4
1,028,537	-				-1.4
1,028,537	-				+2.4
1,028,573	+				+0.8
1,028,577	-				-0.7
1,028,666	+				+0.0
1,028,669	-				+0.1
1,028,954	-				+1.8
1,029,009	+				+1.0
1,029,021	+		HMPREF1058_RS15060	0.11	+2.1
1,029,070	-		HMPREF1058_RS15060	0.14	-0.6
1,029,106	+		HMPREF1058_RS15060	0.17	+0.7
1,029,121	+		HMPREF1058_RS15060	0.18	+1.4
1,029,128	+		HMPREF1058_RS15060	0.19	+1.2
1,029,128	+		HMPREF1058_RS15060	0.19	+0.8
1,029,128	+		HMPREF1058_RS15060	0.19	+2.4
1,029,128	+		HMPREF1058_RS15060	0.19	+2.0
1,029,129	-		HMPREF1058_RS15060	0.19	-1.6
1,029,129	-		HMPREF1058_RS15060	0.19	+1.2
1,029,186	-		HMPREF1058_RS15060	0.23	-0.3
1,029,394	+		HMPREF1058_RS15060	0.38	+3.2
1,029,395	-		HMPREF1058_RS15060	0.38	+3.5
1,029,395	-		HMPREF1058_RS15060	0.38	+1.5
1,029,398	+		HMPREF1058_RS15060	0.38	+1.5
1,029,399	-		HMPREF1058_RS15060	0.39	+1.2
1,029,399	-		HMPREF1058_RS15060	0.39	+1.5
1,029,404	-		HMPREF1058_RS15060	0.39	+2.2
1,029,404	-		HMPREF1058_RS15060	0.39	+0.8
1,029,406	-		HMPREF1058_RS15060	0.39	-0.6
1,029,433	+		HMPREF1058_RS15060	0.41	+2.3
1,029,433	+		HMPREF1058_RS15060	0.41	+0.0
1,029,509	+		HMPREF1058_RS15060	0.47	+1.3
1,029,613	+		HMPREF1058_RS15060	0.54	+1.7
1,029,740	-		HMPREF1058_RS15060	0.64	+0.6
1,029,769	+		HMPREF1058_RS15060	0.66	+1.8
1,029,844	-		HMPREF1058_RS15060	0.71	+0.7
1,029,877	+		HMPREF1058_RS15060	0.74	+1.9
1,029,960	+		HMPREF1058_RS15060	0.80	+0.6
1,029,999	+		HMPREF1058_RS15060	0.83	+0.6
1,029,999	+		HMPREF1058_RS15060	0.83	+2.0
1,030,006	+		HMPREF1058_RS15060	0.83	+0.6
1,030,010	+		HMPREF1058_RS15060	0.84	+2.6
1,030,105	+				+1.0
1,030,105	+				+1.8
1,030,106	-				+1.5
1,030,118	+				+2.3
1,030,179	+				+0.4
1,030,179	+				+0.6
1,030,180	-				+1.1
1,030,182	-				+0.2
1,030,184	-				+0.6
1,030,238	+				+0.4
1,030,238	+				+0.9
1,030,240	+				+0.7
1,030,240	+				+1.6
1,030,457	+		HMPREF1058_RS15055	0.30	-1.2
1,030,458	-		HMPREF1058_RS15055	0.30	-1.4
1,030,547	+		HMPREF1058_RS15055	0.46	+1.1
1,030,575	-		HMPREF1058_RS15055	0.51	-0.9
1,030,581	+		HMPREF1058_RS15055	0.52	+0.4
1,030,582	-		HMPREF1058_RS15055	0.52	+0.3
1,030,582	-		HMPREF1058_RS15055	0.52	-1.4
1,030,583	+		HMPREF1058_RS15055	0.52	-0.2
1,030,601	+		HMPREF1058_RS15055	0.55	+1.0
1,030,602	-		HMPREF1058_RS15055	0.56	-0.3
1,030,606	-		HMPREF1058_RS15055	0.56	-0.8
1,030,707	+		HMPREF1058_RS15055	0.74	-0.1
1,030,707	+		HMPREF1058_RS15055	0.74	-1.5
1,030,708	-		HMPREF1058_RS15055	0.75	+1.8
1,030,715	+		HMPREF1058_RS15055	0.76	+0.5
1,030,729	-		HMPREF1058_RS15055	0.78	-0.5
1,030,889	-				-0.2
1,030,920	-				+2.4
1,030,992	+		HMPREF1058_RS15050	0.11	-0.2
1,031,066	+		HMPREF1058_RS15050	0.17	-1.3
1,031,066	+		HMPREF1058_RS15050	0.17	+0.6
1,031,211	-		HMPREF1058_RS15050	0.31	+0.3