Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14460

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,194,308	+		HMPREF1058_RS14465	0.33	-0.6
1,194,309	-		HMPREF1058_RS14465	0.33	-0.9
1,194,314	-		HMPREF1058_RS14465	0.34	+0.3
1,194,404	-		HMPREF1058_RS14465	0.44	-0.6
1,194,404	-		HMPREF1058_RS14465	0.44	-0.6
1,194,406	-		HMPREF1058_RS14465	0.44	-0.3
1,194,435	+		HMPREF1058_RS14465	0.48	+0.3
1,194,521	+		HMPREF1058_RS14465	0.58	+0.6
1,194,595	+		HMPREF1058_RS14465	0.66	+0.7
1,194,772	+		HMPREF1058_RS14465	0.87	+2.6
1,194,847	+				-1.3
1,194,877	-				+2.5
1,194,899	-				+2.7
1,194,932	-				+0.7
1,194,977	-				-1.0
1,194,997	-				-2.2
1,195,036	+				-0.2
1,195,036	+				-0.9
1,195,037	-				-3.2
1,195,042	-				-2.2
1,195,049	-				+2.3
1,195,077	+				+0.7
1,195,095	-				-1.4
1,195,116	+				+0.3
1,195,121	-				+0.6
1,195,133	-				-1.5
1,195,200	-				-0.7
1,195,248	+				-0.7
1,195,248	+				-1.6
1,195,249	-				-1.0
1,195,249	-				-2.9
1,195,251	-				-0.9
1,195,251	-				+0.7
1,195,252	+				-1.9
1,195,252	+				-0.3
1,195,253	-				-1.1
1,195,253	-				+0.7
1,195,270	+				-0.2
1,195,286	-				-1.8
1,195,366	+				-2.1
1,195,366	+				+1.3
1,195,367	-				+2.3
1,195,380	+				-1.7
1,195,380	+				+0.7
1,195,381	-				-2.8
1,195,421	+				-0.6
1,195,476	-		HMPREF1058_RS14460	0.13	-0.3
1,195,499	+		HMPREF1058_RS14460	0.15	-0.5
1,195,586	-		HMPREF1058_RS14460	0.20	-1.6
1,195,603	+		HMPREF1058_RS14460	0.21	-1.0
1,195,608	-		HMPREF1058_RS14460	0.21	-2.5
1,195,627	+		HMPREF1058_RS14460	0.23	-0.9
1,195,651	+		HMPREF1058_RS14460	0.24	-2.3
1,195,652	-		HMPREF1058_RS14460	0.24	-0.4
1,195,661	+		HMPREF1058_RS14460	0.25	-0.9
1,195,722	-		HMPREF1058_RS14460	0.29	-0.8
1,195,799	+		HMPREF1058_RS14460	0.33	+2.3
1,195,962	+		HMPREF1058_RS14460	0.43	-0.7
1,196,010	-		HMPREF1058_RS14460	0.46	-0.6
1,196,012	+		HMPREF1058_RS14460	0.46	-0.5
1,196,018	-		HMPREF1058_RS14460	0.47	-1.2
1,196,062	+		HMPREF1058_RS14460	0.50	-0.1
1,196,085	-		HMPREF1058_RS14460	0.51	+2.3
1,196,097	-		HMPREF1058_RS14460	0.52	-1.1
1,196,097	-		HMPREF1058_RS14460	0.52	-0.5
1,196,162	+		HMPREF1058_RS14460	0.56	-0.1
1,196,213	+		HMPREF1058_RS14460	0.59	+0.1
1,196,277	-		HMPREF1058_RS14460	0.63	-2.9
1,196,293	+		HMPREF1058_RS14460	0.64	-3.5
1,196,293	+		HMPREF1058_RS14460	0.64	-0.9
1,196,294	-		HMPREF1058_RS14460	0.64	-0.3
1,196,351	-		HMPREF1058_RS14460	0.67	-2.0
1,196,351	-		HMPREF1058_RS14460	0.67	-2.5
1,196,351	-		HMPREF1058_RS14460	0.67	+2.3
1,196,351	-		HMPREF1058_RS14460	0.67	-0.6
1,196,356	+		HMPREF1058_RS14460	0.68	-0.2
1,196,357	-		HMPREF1058_RS14460	0.68	-0.5
1,196,366	+		HMPREF1058_RS14460	0.68	-1.6
1,196,367	-		HMPREF1058_RS14460	0.68	-1.3
1,196,399	+		HMPREF1058_RS14460	0.70	-1.3
1,196,439	+		HMPREF1058_RS14460	0.73	-1.0
1,196,439	+		HMPREF1058_RS14460	0.73	-1.6
1,196,439	+		HMPREF1058_RS14460	0.73	-2.5
1,196,440	-				+0.7
1,196,494	+		HMPREF1058_RS14460	0.76	-0.4
1,196,494	+		HMPREF1058_RS14460	0.76	-0.4
1,196,494	+		HMPREF1058_RS14460	0.76	-0.6
1,196,494	+		HMPREF1058_RS14460	0.76	-0.6
1,196,499	+		HMPREF1058_RS14460	0.76	-0.5
1,196,500	-		HMPREF1058_RS14460	0.77	-0.6
1,196,528	+		HMPREF1058_RS14460	0.78	+0.0
1,196,597	+		HMPREF1058_RS14460	0.83	-0.8
1,196,679	-		HMPREF1058_RS14460	0.88	-2.3
1,196,679	-		HMPREF1058_RS14460	0.88	-1.4
1,196,694	-				+2.7
1,196,723	-				+1.0
1,196,725	+				-1.0
1,196,776	+				-1.4
1,196,964	+				-0.4
1,196,964	+				-0.7
1,196,964	+				+0.2
1,197,003	-				-0.2
1,197,008	-				-1.0
1,197,008	-				-1.9
1,197,009	+				+0.7
1,197,010	-				-2.1
1,197,018	-				-0.8
1,197,036	-				-1.0
1,197,106	+				+0.1
1,197,158	-		HMPREF1058_RS14455	0.12	-2.5
1,197,164	-		HMPREF1058_RS14455	0.12	-0.3
1,197,206	-		HMPREF1058_RS14455	0.15	-1.7
1,197,291	-		HMPREF1058_RS14455	0.22	-0.8
1,197,369	+		HMPREF1058_RS14455	0.29	-0.1
1,197,370	-		HMPREF1058_RS14455	0.29	-0.5
1,197,370	-		HMPREF1058_RS14455	0.29	-0.7
1,197,370	-		HMPREF1058_RS14455	0.29	+0.6
1,197,448	+		HMPREF1058_RS14455	0.35	-1.0
1,197,453	-		HMPREF1058_RS14455	0.36	+0.7
1,197,481	+		HMPREF1058_RS14455	0.38	-1.4
1,197,482	-		HMPREF1058_RS14455	0.38	+0.1
1,197,543	-		HMPREF1058_RS14455	0.43	+0.6
1,197,543	-		HMPREF1058_RS14455	0.43	-0.9
1,197,550	+		HMPREF1058_RS14455	0.44	-0.5
1,197,631	+		HMPREF1058_RS14455	0.50	-0.2
1,197,639	+		HMPREF1058_RS14455	0.51	+0.8
1,197,640	-		HMPREF1058_RS14455	0.51	+0.4
1,197,816	+		HMPREF1058_RS14455	0.66	-2.1
1,197,818	+		HMPREF1058_RS14455	0.66	-1.3
1,197,818	+		HMPREF1058_RS14455	0.66	-1.0
1,197,819	-		HMPREF1058_RS14455	0.66	-4.0
1,197,819	-		HMPREF1058_RS14455	0.66	-0.6
1,197,825	+		HMPREF1058_RS14455	0.66	-1.0
1,197,825	+		HMPREF1058_RS14455	0.66	-0.7
1,197,826	-		HMPREF1058_RS14455	0.67	-1.2