Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14300

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,241,822	-		HMPREF1058_RS14305	0.80	+0.2
1,241,966	-		HMPREF1058_RS14305	0.87	+0.6
1,241,990	+		HMPREF1058_RS14305	0.88	-0.0
1,242,228	-				-1.2
1,242,287	-				-0.4
1,242,288	+				+1.3
1,242,289	-				-0.3
1,242,293	+				+0.5
1,242,298	+				+0.6
1,242,337	+				-1.2
1,242,349	+				+0.4
1,242,350	-				+1.6
1,242,375	-				-0.4
1,242,392	-				-0.8
1,242,417	-				-0.3
1,242,515	-				+1.5
1,242,515	-				+2.1
1,242,519	-				+2.4
1,242,567	-		HMPREF1058_RS14300	0.13	+2.6
1,242,653	-		HMPREF1058_RS14300	0.19	+1.1
1,242,679	+		HMPREF1058_RS14300	0.21	+1.7
1,242,679	+		HMPREF1058_RS14300	0.21	+2.0
1,242,681	+		HMPREF1058_RS14300	0.21	+2.0
1,242,681	+		HMPREF1058_RS14300	0.21	-0.4
1,242,706	+		HMPREF1058_RS14300	0.22	+2.2
1,242,728	+		HMPREF1058_RS14300	0.24	+0.8
1,242,729	-		HMPREF1058_RS14300	0.24	+1.1
1,242,952	+		HMPREF1058_RS14300	0.40	+1.6
1,243,069	+		HMPREF1058_RS14300	0.48	-0.1
1,243,128	+		HMPREF1058_RS14300	0.52	+2.8
1,243,130	+		HMPREF1058_RS14300	0.52	+0.6
1,243,146	-		HMPREF1058_RS14300	0.53	+1.4
1,243,183	-		HMPREF1058_RS14300	0.56	-1.0
1,243,446	+		HMPREF1058_RS14300	0.74	+0.6
1,243,531	-		HMPREF1058_RS14300	0.80	+2.2
1,243,581	-		HMPREF1058_RS14300	0.84	+1.1
1,243,581	-		HMPREF1058_RS14300	0.84	+2.5
1,243,583	+		HMPREF1058_RS14300	0.84	+0.4
1,243,583	+		HMPREF1058_RS14300	0.84	+0.6
1,243,615	-		HMPREF1058_RS14300	0.86	+1.5
1,243,634	-		HMPREF1058_RS14300	0.87	+1.5
1,243,638	-		HMPREF1058_RS14300	0.88	+1.4
1,243,804	+				+1.6
1,243,888	+				-0.7
1,243,889	-				-0.6
1,243,913	+				+1.0
1,243,913	+				-0.0
1,243,926	+				+0.0
1,244,017	+		HMPREF1058_RS14295	0.10	-2.1
1,244,020	+		HMPREF1058_RS14295	0.11	-1.2
1,244,062	+		HMPREF1058_RS14295	0.17	+2.0
1,244,114	+		HMPREF1058_RS14295	0.24	-1.1
1,244,210	+		HMPREF1058_RS14295	0.38	-1.5
1,244,211	-		HMPREF1058_RS14295	0.38	+0.8
1,244,216	-		HMPREF1058_RS14295	0.38	-0.1
1,244,230	-		HMPREF1058_RS14295	0.40	+1.9
1,244,230	-		HMPREF1058_RS14295	0.40	-0.6
1,244,251	-		HMPREF1058_RS14295	0.43	-0.9
1,244,357	+		HMPREF1058_RS14295	0.58	-3.1
1,244,358	-		HMPREF1058_RS14295	0.58	+1.1
1,244,359	+		HMPREF1058_RS14295	0.59	-5.1
1,244,360	+		HMPREF1058_RS14295	0.59	-2.5
1,244,462	-		HMPREF1058_RS14295	0.73	+0.1
1,244,472	+		HMPREF1058_RS14295	0.75	-1.2
1,244,614	+				+0.3
1,244,650	-				-0.1
1,244,702	-				-1.7
1,244,738	+		HMPREF1058_RS14290	0.15	-0.1
1,244,785	+		HMPREF1058_RS14290	0.24	-0.1