Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13940

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,321,069	+		HMPREF1058_RS13945	0.47	+1.0
1,321,080	-		HMPREF1058_RS13945	0.48	+1.1
1,321,084	+		HMPREF1058_RS13945	0.48	+1.5
1,321,085	-		HMPREF1058_RS13945	0.48	+0.7
1,321,085	-		HMPREF1058_RS13945	0.48	+0.1
1,321,203	+		HMPREF1058_RS13945	0.56	-1.2
1,321,204	-		HMPREF1058_RS13945	0.56	-0.3
1,321,213	+		HMPREF1058_RS13945	0.57	-3.0
1,321,305	-		HMPREF1058_RS13945	0.62	-0.7
1,321,310	+		HMPREF1058_RS13945	0.63	-0.3
1,321,317	-		HMPREF1058_RS13945	0.63	+1.0
1,321,317	-		HMPREF1058_RS13945	0.63	+1.1
1,321,359	+		HMPREF1058_RS13945	0.66	-1.5
1,321,360	-				+3.3
1,321,385	+		HMPREF1058_RS13945	0.68	-0.8
1,321,386	-		HMPREF1058_RS13945	0.68	-0.3
1,321,386	-		HMPREF1058_RS13945	0.68	+0.4
1,321,503	+		HMPREF1058_RS13945	0.75	-1.4
1,321,517	-		HMPREF1058_RS13945	0.76	+0.2
1,321,517	-		HMPREF1058_RS13945	0.76	-2.0
1,321,526	+		HMPREF1058_RS13945	0.77	-0.0
1,321,529	-		HMPREF1058_RS13945	0.77	+1.1
1,321,560	+		HMPREF1058_RS13945	0.79	+0.5
1,321,571	+		HMPREF1058_RS13945	0.80	-0.3
1,321,572	-		HMPREF1058_RS13945	0.80	-1.0
1,321,619	+		HMPREF1058_RS13945	0.83	-1.3
1,321,637	-		HMPREF1058_RS13945	0.84	-0.6
1,321,658	+		HMPREF1058_RS13945	0.85	+0.3
1,321,693	+		HMPREF1058_RS13945	0.87	-2.8
1,321,693	+		HMPREF1058_RS13945	0.87	-0.1
1,321,721	+		HMPREF1058_RS13945	0.89	-0.5
1,321,744	+				+1.1
1,321,909	+				-0.5
1,321,910	-				-0.5
1,321,938	+				+0.3
1,321,976	+				-0.8
1,321,977	-				+1.7
1,321,977	-				-2.4
1,321,986	+				+0.7
1,321,987	-				-1.5
1,321,987	-				-0.6
1,321,990	-				-2.9
1,321,990	-				-2.0
1,322,007	-				-2.9
1,322,036	-				-2.9
1,322,070	+				-0.6
1,322,097	+				-0.1
1,322,127	-		HMPREF1058_RS13940	0.17	+0.8
1,322,127	-		HMPREF1058_RS13940	0.17	+1.1
1,322,178	-		HMPREF1058_RS13940	0.32	+0.4
1,322,181	+		HMPREF1058_RS13940	0.33	+0.9
1,322,182	-		HMPREF1058_RS13940	0.34	+1.1
1,322,182	-		HMPREF1058_RS13940	0.34	-0.2
1,322,182	-		HMPREF1058_RS13940	0.34	+0.8
1,322,209	+		HMPREF1058_RS13940	0.42	-1.0
1,322,214	+		HMPREF1058_RS13940	0.43	-0.1
1,322,215	-		HMPREF1058_RS13940	0.43	+0.8
1,322,215	-		HMPREF1058_RS13940	0.43	+0.1
1,322,234	+		HMPREF1058_RS13940	0.49	-0.9
1,322,234	+		HMPREF1058_RS13940	0.49	+0.2
1,322,235	-		HMPREF1058_RS13940	0.49	+0.3
1,322,258	-		HMPREF1058_RS13940	0.56	+1.5
1,322,259	+		HMPREF1058_RS13940	0.57	+0.5
1,322,259	+		HMPREF1058_RS13940	0.57	-0.1
1,322,260	-		HMPREF1058_RS13940	0.57	+0.5
1,322,260	-		HMPREF1058_RS13940	0.57	+1.2
1,322,285	-		HMPREF1058_RS13940	0.64	+1.0
1,322,285	-		HMPREF1058_RS13940	0.64	+2.1
1,322,286	+		HMPREF1058_RS13940	0.65	+0.9
1,322,291	+		HMPREF1058_RS13940	0.66	-2.8
1,322,291	+		HMPREF1058_RS13940	0.66	-1.3
1,322,291	+		HMPREF1058_RS13940	0.66	-0.4
1,322,292	-		HMPREF1058_RS13940	0.66	+1.0
1,322,292	-		HMPREF1058_RS13940	0.66	+0.7
1,322,292	-		HMPREF1058_RS13940	0.66	+3.8
1,322,411	-				+1.2
1,322,411	-				+0.6
1,322,411	-				+2.7
1,322,411	-				+0.6
1,322,414	+				-1.2
1,322,414	+				-0.7
1,322,415	-				+0.7
1,322,446	+				+0.9
1,322,616	+		HMPREF1058_RS13935	0.56	+0.5
1,322,768	-				+0.8
1,322,768	-				-0.1
1,322,768	-				+1.8
1,322,772	-				-0.4
1,322,794	+				-1.5
1,322,795	-				-0.1
1,322,798	-				+0.9
1,322,802	-				+0.2