Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13865

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,335,013	+		HMPREF1058_RS13870	0.24	-0.7
1,335,014	-		HMPREF1058_RS13870	0.24	+0.2
1,335,037	+		HMPREF1058_RS13870	0.26	-0.3
1,335,076	+		HMPREF1058_RS13870	0.29	-1.7
1,335,077	-		HMPREF1058_RS13870	0.30	+1.8
1,335,077	-		HMPREF1058_RS13870	0.30	-2.4
1,335,118	-		HMPREF1058_RS13870	0.33	-0.5
1,335,132	-		HMPREF1058_RS13870	0.34	+0.2
1,335,158	-		HMPREF1058_RS13870	0.36	-1.1
1,335,206	-		HMPREF1058_RS13870	0.40	-2.5
1,335,239	+		HMPREF1058_RS13870	0.43	-0.1
1,335,239	+		HMPREF1058_RS13870	0.43	+0.9
1,335,269	+		HMPREF1058_RS13870	0.45	+0.2
1,335,269	+		HMPREF1058_RS13870	0.45	-0.8
1,335,270	-		HMPREF1058_RS13870	0.45	+0.2
1,335,270	-		HMPREF1058_RS13870	0.45	-1.4
1,335,289	-		HMPREF1058_RS13870	0.47	-1.9
1,335,371	+		HMPREF1058_RS13870	0.53	-1.2
1,335,391	-		HMPREF1058_RS13870	0.55	-0.5
1,335,476	-		HMPREF1058_RS13870	0.62	+0.6
1,335,478	-		HMPREF1058_RS13870	0.62	+0.0
1,335,502	-		HMPREF1058_RS13870	0.64	-0.1
1,335,517	+		HMPREF1058_RS13870	0.65	-0.7
1,335,621	+		HMPREF1058_RS13870	0.73	-0.5
1,335,622	-		HMPREF1058_RS13870	0.74	-0.2
1,335,676	+		HMPREF1058_RS13870	0.78	-0.4
1,335,676	+		HMPREF1058_RS13870	0.78	+0.2
1,335,677	-		HMPREF1058_RS13870	0.78	+0.3
1,335,680	+		HMPREF1058_RS13870	0.78	-2.1
1,335,680	+		HMPREF1058_RS13870	0.78	-0.2
1,335,680	+		HMPREF1058_RS13870	0.78	+0.5
1,335,680	+		HMPREF1058_RS13870	0.78	-0.0
1,335,680	+		HMPREF1058_RS13870	0.78	-0.7
1,335,680	+		HMPREF1058_RS13870	0.78	-2.2
1,335,680	+		HMPREF1058_RS13870	0.78	-0.8
1,335,681	-		HMPREF1058_RS13870	0.78	-1.0
1,335,681	-		HMPREF1058_RS13870	0.78	+0.2
1,335,687	-		HMPREF1058_RS13870	0.79	-2.2
1,335,713	-		HMPREF1058_RS13870	0.81	-2.3
1,335,714	+		HMPREF1058_RS13870	0.81	+0.3
1,335,715	-		HMPREF1058_RS13870	0.81	-0.3
1,335,907	+				-0.9
1,335,992	+				+2.8
1,335,996	+				-0.5
1,335,997	-				-1.3
1,335,997	-				-2.2
1,335,997	-				+0.8
1,335,997	-				-0.5
1,336,000	+				+0.7
1,336,000	+				+0.7
1,336,000	+				-0.5
1,336,092	+				+0.7
1,336,305	-		HMPREF1058_RS13865	0.14	-0.8
1,336,332	+		HMPREF1058_RS13865	0.16	-0.6
1,336,332	+		HMPREF1058_RS13865	0.16	-1.3
1,336,333	-		HMPREF1058_RS13865	0.16	-1.4
1,336,334	+		HMPREF1058_RS13865	0.16	-0.2
1,336,446	+		HMPREF1058_RS13865	0.21	-0.6
1,336,679	-		HMPREF1058_RS13865	0.32	-2.2
1,336,684	+		HMPREF1058_RS13865	0.32	-0.1
1,336,751	+		HMPREF1058_RS13865	0.35	-0.6
1,336,751	+		HMPREF1058_RS13865	0.35	-1.4
1,336,808	+		HMPREF1058_RS13865	0.38	-0.7
1,336,809	-		HMPREF1058_RS13865	0.38	+0.6
1,336,903	-		HMPREF1058_RS13865	0.43	-1.0
1,337,079	-		HMPREF1058_RS13865	0.51	-0.2
1,337,241	+		HMPREF1058_RS13865	0.59	-0.3
1,337,242	-		HMPREF1058_RS13865	0.59	-0.7
1,337,288	-		HMPREF1058_RS13865	0.61	-2.1
1,337,330	+		HMPREF1058_RS13865	0.63	-1.9
1,337,398	-		HMPREF1058_RS13865	0.66	-1.6
1,337,421	-		HMPREF1058_RS13865	0.67	-0.7
1,337,435	+		HMPREF1058_RS13865	0.68	-0.7
1,337,435	+		HMPREF1058_RS13865	0.68	+0.6
1,337,456	+		HMPREF1058_RS13865	0.69	+0.3
1,337,578	+		HMPREF1058_RS13865	0.75	+0.1
1,337,657	+		HMPREF1058_RS13865	0.78	+1.1
1,337,687	+		HMPREF1058_RS13865	0.80	-2.6
1,337,688	-		HMPREF1058_RS13865	0.80	-2.0
1,337,688	-		HMPREF1058_RS13865	0.80	+1.7
1,337,902	-				-0.4
1,337,917	+				-0.4
1,337,948	+				+0.3
1,337,972	+				-1.0
1,338,082	-				+0.1
1,338,130	+				-0.4
1,338,149	+				+1.1
1,338,150	-				-2.2
1,338,154	-				-0.8
1,338,154	-				+0.1
1,338,154	-				+0.6
1,338,159	+				+0.7
1,338,219	+				+1.9
1,338,284	+				-0.3
1,338,287	-				-0.1
1,338,323	-				-1.0
1,338,348	-				+0.1
1,338,404	+				-1.0
1,338,406	+				-2.6
1,338,407	-				-2.3
1,338,407	-				+1.3
1,338,407	-				-0.3
1,338,500	-		HMPREF1058_RS13860	0.11	-1.2
1,338,663	+		HMPREF1058_RS13860	0.16	+0.3
1,338,667	+		HMPREF1058_RS13860	0.16	-0.7
1,338,667	+		HMPREF1058_RS13860	0.16	-0.8
1,338,668	-		HMPREF1058_RS13860	0.16	+1.8
1,338,783	-		HMPREF1058_RS13860	0.20	+1.1
1,339,080	-		HMPREF1058_RS13860	0.29	-3.3