Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13735

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,384,324	-				+0.4
1,384,329	+				-1.4
1,384,381	-				-0.8
1,384,467	-				+0.9
1,384,497	+				-0.3
1,384,521	-				-2.0
1,384,621	+		HMPREF1058_RS13740	0.11	-0.5
1,384,622	-		HMPREF1058_RS13740	0.11	+0.4
1,384,622	-		HMPREF1058_RS13740	0.11	+0.3
1,384,623	+		HMPREF1058_RS13740	0.11	-0.9
1,384,623	+		HMPREF1058_RS13740	0.11	-1.8
1,384,627	-		HMPREF1058_RS13740	0.12	+0.3
1,384,629	-		HMPREF1058_RS13740	0.12	+0.5
1,384,683	+		HMPREF1058_RS13740	0.20	+0.2
1,384,704	+		HMPREF1058_RS13740	0.23	-0.8
1,384,705	-		HMPREF1058_RS13740	0.23	+1.7
1,384,705	-		HMPREF1058_RS13740	0.23	-0.4
1,384,761	+		HMPREF1058_RS13740	0.31	-0.8
1,384,761	+		HMPREF1058_RS13740	0.31	-0.7
1,384,762	-		HMPREF1058_RS13740	0.31	-1.3
1,384,762	-		HMPREF1058_RS13740	0.31	+0.1
1,384,765	+		HMPREF1058_RS13740	0.32	-1.2
1,384,766	-		HMPREF1058_RS13740	0.32	+0.4
1,384,766	-		HMPREF1058_RS13740	0.32	-0.5
1,384,771	+		HMPREF1058_RS13740	0.33	+1.1
1,384,771	+		HMPREF1058_RS13740	0.33	-1.4
1,384,771	+		HMPREF1058_RS13740	0.33	-2.8
1,384,771	+		HMPREF1058_RS13740	0.33	-1.2
1,384,875	+		HMPREF1058_RS13740	0.48	+0.5
1,384,876	-		HMPREF1058_RS13740	0.48	-2.3
1,384,934	+		HMPREF1058_RS13740	0.56	-0.4
1,384,965	-		HMPREF1058_RS13740	0.61	-1.0
1,384,997	-		HMPREF1058_RS13740	0.65	-1.4
1,384,997	-				+2.9
1,385,052	+		HMPREF1058_RS13740	0.73	+0.4
1,385,063	+		HMPREF1058_RS13740	0.75	-3.3
1,385,096	+		HMPREF1058_RS13740	0.80	-1.9
1,385,106	-		HMPREF1058_RS13740	0.81	+0.4
1,385,153	+		HMPREF1058_RS13740	0.88	+0.6
1,385,153	+		HMPREF1058_RS13740	0.88	-0.1
1,385,153	+		HMPREF1058_RS13740	0.88	+0.7
1,385,154	-		HMPREF1058_RS13740	0.88	-0.3
1,385,154	-		HMPREF1058_RS13740	0.88	+0.2
1,385,169	+				-0.2
1,385,217	+				+0.7
1,385,221	+				-1.0
1,385,221	+				-0.2
1,385,222	-				-0.4
1,385,223	+				-0.2
1,385,230	-				+0.6
1,385,230	-				+0.1
1,385,231	+				-0.9
1,385,231	+				-1.1
1,385,231	+				-1.0
1,385,232	-				+1.2
1,385,232	-				+0.2
1,385,232	-				-1.0
1,385,235	+				-0.7
1,385,236	-				+0.1
1,385,253	-				+1.0
1,385,298	+				-1.2
1,385,312	+				+0.7
1,385,624	-		HMPREF1058_RS13735	0.37	+1.2
1,385,666	-		HMPREF1058_RS13735	0.42	+0.7
1,385,817	+		HMPREF1058_RS13735	0.60	-2.0
1,385,817	+		HMPREF1058_RS13735	0.60	-0.1
1,385,820	-		HMPREF1058_RS13735	0.60	+0.2
1,385,826	+		HMPREF1058_RS13735	0.61	+0.5
1,385,827	-		HMPREF1058_RS13735	0.61	+0.5
1,385,899	-		HMPREF1058_RS13735	0.69	+2.0
1,385,913	+		HMPREF1058_RS13735	0.71	-0.8
1,385,935	-		HMPREF1058_RS13735	0.73	+1.1
1,385,953	+		HMPREF1058_RS13735	0.76	+0.6
1,385,996	-		HMPREF1058_RS13735	0.81	-0.5
1,386,145	+				-0.5
1,386,256	+		HMPREF1058_RS13730	0.10	+1.0
1,386,257	-		HMPREF1058_RS13730	0.10	-2.3
1,386,602	-		HMPREF1058_RS13730	0.61	-2.2
1,386,624	-		HMPREF1058_RS13730	0.65	-2.1
1,386,624	-		HMPREF1058_RS13730	0.65	-1.4
1,386,695	-		HMPREF1058_RS13730	0.75	-1.9
1,386,752	-		HMPREF1058_RS13730	0.84	-2.2
1,386,752	-		HMPREF1058_RS13730	0.84	-1.3
1,386,752	-		HMPREF1058_RS13730	0.84	-2.0
1,386,814	+				-1.8
1,386,843	-				+1.0
1,386,863	-				-0.9
1,386,969	+				-2.8
1,387,026	-				-3.2
1,387,057	+				-2.8
1,387,067	-				-1.7
1,387,106	-				-2.4
1,387,129	-		HMPREF1058_RS13725	0.10	+1.3