Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13530

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,453,830	+				-0.8
1,453,969	+		HMPREF1058_RS13535	0.15	-0.5
1,454,029	+		HMPREF1058_RS13535	0.21	-0.2
1,454,030	-		HMPREF1058_RS13535	0.21	+0.4
1,454,062	+		HMPREF1058_RS13535	0.25	-2.2
1,454,064	+		HMPREF1058_RS13535	0.25	-0.4
1,454,091	-		HMPREF1058_RS13535	0.28	-0.5
1,454,151	+		HMPREF1058_RS13535	0.34	-1.1
1,454,152	-		HMPREF1058_RS13535	0.34	-0.1
1,454,188	-		HMPREF1058_RS13535	0.38	-0.2
1,454,272	-		HMPREF1058_RS13535	0.47	-0.3
1,454,272	-		HMPREF1058_RS13535	0.47	-0.1
1,454,272	-		HMPREF1058_RS13535	0.47	+1.3
1,454,314	-		HMPREF1058_RS13535	0.51	+0.6
1,454,379	-		HMPREF1058_RS13535	0.58	-0.0
1,454,464	+		HMPREF1058_RS13535	0.67	-1.7
1,454,465	-		HMPREF1058_RS13535	0.67	-1.3
1,454,488	+		HMPREF1058_RS13535	0.69	-2.3
1,454,544	-		HMPREF1058_RS13535	0.75	-0.1
1,454,544	-		HMPREF1058_RS13535	0.75	-0.4
1,454,544	-		HMPREF1058_RS13535	0.75	+0.2
1,454,546	-		HMPREF1058_RS13535	0.75	-0.5
1,454,549	-		HMPREF1058_RS13535	0.76	-0.6
1,454,549	-		HMPREF1058_RS13535	0.76	+0.2
1,454,549	-		HMPREF1058_RS13535	0.76	+1.3
1,454,595	-		HMPREF1058_RS13535	0.81	-1.8
1,454,623	+		HMPREF1058_RS13535	0.83	-1.5
1,454,651	+		HMPREF1058_RS13535	0.86	+0.3
1,454,708	-				+0.3
1,454,738	+				-1.2
1,454,886	+				-0.4
1,454,887	-				+1.1
1,454,909	+				-0.6
1,454,910	+				-0.7
1,454,916	+				+0.4
1,454,917	-		HMPREF1058_RS13530	0.10	-1.0
1,454,918	+		HMPREF1058_RS13530	0.10	-0.5
1,455,069	+		HMPREF1058_RS13530	0.22	-0.6
1,455,069	+		HMPREF1058_RS13530	0.22	-0.1
1,455,070	-		HMPREF1058_RS13530	0.22	-0.1
1,455,071	+		HMPREF1058_RS13530	0.23	+0.2
1,455,071	+		HMPREF1058_RS13530	0.23	+1.3
1,455,100	-		HMPREF1058_RS13530	0.25	-1.3
1,455,100	-		HMPREF1058_RS13530	0.25	-3.2
1,455,103	+		HMPREF1058_RS13530	0.25	-2.2
1,455,103	+		HMPREF1058_RS13530	0.25	-1.0
1,455,104	-		HMPREF1058_RS13530	0.25	-0.9
1,455,171	-		HMPREF1058_RS13530	0.31	-1.4
1,455,175	+		HMPREF1058_RS13530	0.31	-0.9
1,455,222	+		HMPREF1058_RS13530	0.35	-1.7
1,455,500	+		HMPREF1058_RS13530	0.57	+0.3
1,455,518	+		HMPREF1058_RS13530	0.59	+1.6
1,455,519	-		HMPREF1058_RS13530	0.59	-3.1
1,455,633	-		HMPREF1058_RS13530	0.68	-1.0
1,455,699	+		HMPREF1058_RS13530	0.74	-0.8
1,455,701	+		HMPREF1058_RS13530	0.74	+0.6
1,455,702	-		HMPREF1058_RS13530	0.74	+0.4
1,455,715	-		HMPREF1058_RS13530	0.75	-0.6
1,455,915	+				-0.9
1,455,920	-				-1.9
1,456,033	+				+0.1
1,456,046	-				+1.0
1,456,114	+				-0.3
1,456,123	+				+0.2
1,456,124	-				-0.1
1,456,204	+				-0.5
1,456,204	+				+0.0
1,456,272	-				-1.9
1,456,297	-				-1.3
1,456,334	-				-1.4
1,456,334	-				-2.6
1,456,334	-				-2.7
1,456,437	+				-0.4
1,456,459	-		HMPREF1058_RS13525	0.10	-1.7
1,456,524	-		HMPREF1058_RS13525	0.15	-0.6
1,456,581	-		HMPREF1058_RS13525	0.19	-1.4
1,456,615	-		HMPREF1058_RS13525	0.22	-0.6
1,456,642	-		HMPREF1058_RS13525	0.24	-0.5
1,456,648	+		HMPREF1058_RS13525	0.24	-0.8
1,456,648	+		HMPREF1058_RS13525	0.24	-1.0
1,456,678	-		HMPREF1058_RS13525	0.26	-0.7
1,456,702	+		HMPREF1058_RS13525	0.28	-1.3
1,456,702	+		HMPREF1058_RS13525	0.28	-0.2
1,456,769	+		HMPREF1058_RS13525	0.33	-1.6
1,456,771	+		HMPREF1058_RS13525	0.33	-1.3
1,456,772	-		HMPREF1058_RS13525	0.33	-0.8
1,456,772	-		HMPREF1058_RS13525	0.33	-1.6
1,456,783	-		HMPREF1058_RS13525	0.34	-2.0
1,456,797	-		HMPREF1058_RS13525	0.35	+0.3
1,456,840	+		HMPREF1058_RS13525	0.38	+0.4
1,456,840	+		HMPREF1058_RS13525	0.38	+0.2
1,456,841	-		HMPREF1058_RS13525	0.38	-1.1
1,456,841	-		HMPREF1058_RS13525	0.38	-2.7
1,456,893	+		HMPREF1058_RS13525	0.42	-0.8
1,456,898	-		HMPREF1058_RS13525	0.42	-1.2
1,456,902	+		HMPREF1058_RS13525	0.42	-1.6
1,457,004	+		HMPREF1058_RS13525	0.50	-1.1
1,457,005	-		HMPREF1058_RS13525	0.50	-2.7