Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13520

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,456,769	+		HMPREF1058_RS13525	0.33	-1.6
1,456,771	+		HMPREF1058_RS13525	0.33	-1.3
1,456,772	-		HMPREF1058_RS13525	0.33	-0.8
1,456,772	-		HMPREF1058_RS13525	0.33	-1.6
1,456,783	-		HMPREF1058_RS13525	0.34	-2.0
1,456,797	-		HMPREF1058_RS13525	0.35	+0.3
1,456,840	+		HMPREF1058_RS13525	0.38	+0.4
1,456,840	+		HMPREF1058_RS13525	0.38	+0.2
1,456,841	-		HMPREF1058_RS13525	0.38	-1.1
1,456,841	-		HMPREF1058_RS13525	0.38	-2.7
1,456,893	+		HMPREF1058_RS13525	0.42	-0.8
1,456,898	-		HMPREF1058_RS13525	0.42	-1.2
1,456,902	+		HMPREF1058_RS13525	0.42	-1.6
1,457,004	+		HMPREF1058_RS13525	0.50	-1.1
1,457,005	-		HMPREF1058_RS13525	0.50	-2.7
1,457,050	-		HMPREF1058_RS13525	0.53	-1.8
1,457,066	+		HMPREF1058_RS13525	0.54	+0.3
1,457,069	-		HMPREF1058_RS13525	0.54	-0.7
1,457,080	-		HMPREF1058_RS13525	0.55	-3.2
1,457,191	+		HMPREF1058_RS13525	0.63	-0.7
1,457,209	-		HMPREF1058_RS13525	0.64	-1.6
1,457,262	+		HMPREF1058_RS13525	0.68	-0.8
1,457,263	-		HMPREF1058_RS13525	0.68	-2.9
1,457,268	+		HMPREF1058_RS13525	0.69	-0.8
1,457,293	-		HMPREF1058_RS13525	0.70	-1.6
1,457,354	+		HMPREF1058_RS13525	0.75	-1.5
1,457,354	+		HMPREF1058_RS13525	0.75	+0.9
1,457,355	-		HMPREF1058_RS13525	0.75	-2.5
1,457,358	+		HMPREF1058_RS13525	0.75	-1.0
1,457,371	-		HMPREF1058_RS13525	0.76	-0.9
1,457,374	-		HMPREF1058_RS13525	0.76	-3.1
1,457,394	+		HMPREF1058_RS13525	0.78	-1.6
1,457,465	+		HMPREF1058_RS13525	0.83	-2.0
1,457,466	-		HMPREF1058_RS13525	0.83	-1.7
1,457,466	-		HMPREF1058_RS13525	0.83	-0.6
1,457,492	+		HMPREF1058_RS13525	0.85	-1.9
1,457,649	+				-1.1
1,457,678	-				-2.0
1,457,682	-				-0.9
1,457,832	-		HMPREF1058_RS13520	0.11	-1.0
1,457,861	-		HMPREF1058_RS13520	0.14	+0.2
1,457,903	+		HMPREF1058_RS13520	0.19	-1.5
1,457,903	+		HMPREF1058_RS13520	0.19	-3.8
1,457,904	-		HMPREF1058_RS13520	0.19	-0.7
1,457,912	+		HMPREF1058_RS13520	0.20	-1.3
1,457,924	-		HMPREF1058_RS13520	0.21	+1.1
1,458,000	-		HMPREF1058_RS13520	0.29	-2.1
1,458,036	+		HMPREF1058_RS13520	0.33	-2.1
1,458,037	-		HMPREF1058_RS13520	0.33	-1.3
1,458,061	-		HMPREF1058_RS13520	0.35	-0.4
1,458,074	+		HMPREF1058_RS13520	0.37	-2.8
1,458,086	+		HMPREF1058_RS13520	0.38	-1.4
1,458,102	-		HMPREF1058_RS13520	0.40	-2.5
1,458,105	+		HMPREF1058_RS13520	0.40	-2.2
1,458,105	+		HMPREF1058_RS13520	0.40	-1.5
1,458,139	+		HMPREF1058_RS13520	0.43	-1.1
1,458,197	+		HMPREF1058_RS13520	0.50	-0.4
1,458,197	+		HMPREF1058_RS13520	0.50	-1.9
1,458,197	+		HMPREF1058_RS13520	0.50	-1.6
1,458,198	-		HMPREF1058_RS13520	0.50	-3.1
1,458,198	-		HMPREF1058_RS13520	0.50	-3.3
1,458,198	-		HMPREF1058_RS13520	0.50	-2.1
1,458,254	+		HMPREF1058_RS13520	0.55	-1.2
1,458,308	-		HMPREF1058_RS13520	0.61	-1.6
1,458,336	+		HMPREF1058_RS13520	0.64	-1.7
1,458,337	-		HMPREF1058_RS13520	0.64	-1.5
1,458,373	-		HMPREF1058_RS13520	0.68	-1.4
1,458,437	-		HMPREF1058_RS13520	0.75	-0.8
1,458,456	-		HMPREF1058_RS13520	0.77	-1.3
1,458,602	-				-1.1
1,458,607	+				-0.7
1,458,638	+				+0.0
1,458,663	-				-0.7
1,458,670	+				+0.3
1,458,671	-				-1.4
1,458,677	+				-0.7
1,458,678	-				-2.5
1,458,678	-				-1.2
1,458,681	+				+0.3
1,458,681	+				+0.4
1,458,682	-				+0.7
1,458,689	+				+0.0
1,458,700	-				-1.9
1,458,809	+				+0.0
1,458,810	-				-3.0
1,458,841	+				-0.5
1,458,842	-				-3.5
1,458,842	-				-2.9
1,458,845	+				-1.5
1,458,892	+				-1.1
1,458,892	+				-0.7
1,458,986	+				-3.0
1,458,986	+				-2.4
1,459,069	+		HMPREF1058_RS13515	0.12	-3.0
1,459,069	+		HMPREF1058_RS13515	0.12	-2.2
1,459,069	+		HMPREF1058_RS13515	0.12	-0.8
1,459,087	+		HMPREF1058_RS13515	0.13	-2.8
1,459,088	-		HMPREF1058_RS13515	0.13	-2.2
1,459,090	-		HMPREF1058_RS13515	0.13	-2.5
1,459,090	-		HMPREF1058_RS13515	0.13	-1.8
1,459,234	+		HMPREF1058_RS13515	0.23	-2.2
1,459,332	+		HMPREF1058_RS13515	0.29	-2.1
1,459,367	-		HMPREF1058_RS13515	0.32	-4.0
1,459,410	-		HMPREF1058_RS13515	0.35	-2.0
1,459,438	+		HMPREF1058_RS13515	0.37	-0.5
1,459,487	+		HMPREF1058_RS13515	0.40	-1.1
1,459,498	+		HMPREF1058_RS13515	0.41	-1.5
1,459,631	+		HMPREF1058_RS13515	0.50	-2.2
1,459,631	+		HMPREF1058_RS13515	0.50	-5.0
1,459,634	-		HMPREF1058_RS13515	0.50	-2.5