Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13515

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,457,903	+		HMPREF1058_RS13520	0.19	-1.5
1,457,903	+		HMPREF1058_RS13520	0.19	-3.8
1,457,904	-		HMPREF1058_RS13520	0.19	-0.7
1,457,912	+		HMPREF1058_RS13520	0.20	-1.3
1,457,924	-		HMPREF1058_RS13520	0.21	+1.1
1,458,000	-		HMPREF1058_RS13520	0.29	-2.1
1,458,036	+		HMPREF1058_RS13520	0.33	-2.1
1,458,037	-		HMPREF1058_RS13520	0.33	-1.3
1,458,061	-		HMPREF1058_RS13520	0.35	-0.4
1,458,074	+		HMPREF1058_RS13520	0.37	-2.8
1,458,086	+		HMPREF1058_RS13520	0.38	-1.4
1,458,102	-		HMPREF1058_RS13520	0.40	-2.5
1,458,105	+		HMPREF1058_RS13520	0.40	-2.2
1,458,105	+		HMPREF1058_RS13520	0.40	-1.5
1,458,139	+		HMPREF1058_RS13520	0.43	-1.1
1,458,197	+		HMPREF1058_RS13520	0.50	-0.4
1,458,197	+		HMPREF1058_RS13520	0.50	-1.9
1,458,197	+		HMPREF1058_RS13520	0.50	-1.6
1,458,198	-		HMPREF1058_RS13520	0.50	-3.1
1,458,198	-		HMPREF1058_RS13520	0.50	-3.3
1,458,198	-		HMPREF1058_RS13520	0.50	-2.1
1,458,254	+		HMPREF1058_RS13520	0.55	-1.2
1,458,308	-		HMPREF1058_RS13520	0.61	-1.6
1,458,336	+		HMPREF1058_RS13520	0.64	-1.7
1,458,337	-		HMPREF1058_RS13520	0.64	-1.5
1,458,373	-		HMPREF1058_RS13520	0.68	-1.4
1,458,437	-		HMPREF1058_RS13520	0.75	-0.8
1,458,456	-		HMPREF1058_RS13520	0.77	-1.3
1,458,602	-				-1.1
1,458,607	+				-0.7
1,458,638	+				+0.0
1,458,663	-				-0.7
1,458,670	+				+0.3
1,458,671	-				-1.4
1,458,677	+				-0.7
1,458,678	-				-2.5
1,458,678	-				-1.2
1,458,681	+				+0.3
1,458,681	+				+0.4
1,458,682	-				+0.7
1,458,689	+				+0.0
1,458,700	-				-1.9
1,458,809	+				+0.0
1,458,810	-				-3.0
1,458,841	+				-0.5
1,458,842	-				-3.5
1,458,842	-				-2.9
1,458,845	+				-1.5
1,458,892	+				-1.1
1,458,892	+				-0.7
1,458,986	+				-3.0
1,458,986	+				-2.4
1,459,069	+		HMPREF1058_RS13515	0.12	-3.0
1,459,069	+		HMPREF1058_RS13515	0.12	-2.2
1,459,069	+		HMPREF1058_RS13515	0.12	-0.8
1,459,087	+		HMPREF1058_RS13515	0.13	-2.8
1,459,088	-		HMPREF1058_RS13515	0.13	-2.2
1,459,090	-		HMPREF1058_RS13515	0.13	-2.5
1,459,090	-		HMPREF1058_RS13515	0.13	-1.8
1,459,234	+		HMPREF1058_RS13515	0.23	-2.2
1,459,332	+		HMPREF1058_RS13515	0.29	-2.1
1,459,367	-		HMPREF1058_RS13515	0.32	-4.0
1,459,410	-		HMPREF1058_RS13515	0.35	-2.0
1,459,438	+		HMPREF1058_RS13515	0.37	-0.5
1,459,487	+		HMPREF1058_RS13515	0.40	-1.1
1,459,498	+		HMPREF1058_RS13515	0.41	-1.5
1,459,631	+		HMPREF1058_RS13515	0.50	-2.2
1,459,631	+		HMPREF1058_RS13515	0.50	-5.0
1,459,634	-		HMPREF1058_RS13515	0.50	-2.5
1,459,783	-		HMPREF1058_RS13515	0.60	-2.4
1,459,783	-		HMPREF1058_RS13515	0.60	-3.4
1,459,814	+		HMPREF1058_RS13515	0.62	-2.8
1,459,816	+		HMPREF1058_RS13515	0.62	-2.2
1,459,828	-		HMPREF1058_RS13515	0.63	-1.1
1,459,878	+		HMPREF1058_RS13515	0.66	-1.8
1,459,879	-		HMPREF1058_RS13515	0.66	-1.7
1,459,880	+		HMPREF1058_RS13515	0.66	-1.6
1,459,880	+		HMPREF1058_RS13515	0.66	-1.2
1,459,881	-		HMPREF1058_RS13515	0.67	-4.0
1,459,888	+		HMPREF1058_RS13515	0.67	-1.1
1,459,904	+		HMPREF1058_RS13515	0.68	-2.6
1,459,924	+		HMPREF1058_RS13515	0.69	-2.4
1,459,924	+		HMPREF1058_RS13515	0.69	-4.0
1,459,937	-		HMPREF1058_RS13515	0.70	-3.3
1,459,975	+		HMPREF1058_RS13515	0.73	-2.4
1,459,976	-		HMPREF1058_RS13515	0.73	-4.7
1,460,033	+		HMPREF1058_RS13515	0.77	-0.6
1,460,039	+		HMPREF1058_RS13515	0.77	-1.7
1,460,057	-		HMPREF1058_RS13515	0.78	-2.4
1,460,113	-		HMPREF1058_RS13515	0.82	-2.2
1,460,115	+		HMPREF1058_RS13515	0.82	-4.2
1,460,123	-		HMPREF1058_RS13515	0.83	-1.7
1,460,123	-		HMPREF1058_RS13515	0.83	-3.8
1,460,123	-		HMPREF1058_RS13515	0.83	-2.0
1,460,147	-		HMPREF1058_RS13515	0.85	-2.8
1,460,155	-		HMPREF1058_RS13515	0.85	-2.2
1,460,158	+		HMPREF1058_RS13515	0.85	-2.3
1,460,158	+		HMPREF1058_RS13515	0.85	-3.8
1,460,179	+		HMPREF1058_RS13515	0.87	-1.6
1,460,181	+		HMPREF1058_RS13515	0.87	-3.8
1,460,181	+		HMPREF1058_RS13515	0.87	-2.5
1,460,181	+		HMPREF1058_RS13515	0.87	-3.8
1,460,312	+				-4.0
1,460,313	-				-3.2
1,460,395	+				-0.7
1,460,477	-				-0.1
1,460,712	+				+1.0
1,460,713	-				+2.7
1,460,835	-		HMPREF1058_RS13510	0.12	+0.9
1,460,884	-		HMPREF1058_RS13510	0.14	+2.0
1,460,902	+		HMPREF1058_RS13510	0.14	-0.4
1,460,902	+		HMPREF1058_RS13510	0.14	-0.5
1,460,951	+		HMPREF1058_RS13510	0.16	-0.8
1,460,951	+		HMPREF1058_RS13510	0.16	+0.3
1,461,012	+		HMPREF1058_RS13510	0.18	+0.8
1,461,012	+				+1.3
1,461,013	-		HMPREF1058_RS13510	0.18	-2.3
1,461,013	-		HMPREF1058_RS13510	0.18	+0.2
1,461,085	-		HMPREF1058_RS13510	0.20	+0.0
1,461,166	-		HMPREF1058_RS13510	0.22	-0.7
1,461,166	-		HMPREF1058_RS13510	0.22	+0.4
1,461,274	+		HMPREF1058_RS13510	0.25	+0.4
1,461,281	-		HMPREF1058_RS13510	0.26	-0.5
1,461,344	+		HMPREF1058_RS13510	0.28	-0.4
1,461,345	-		HMPREF1058_RS13510	0.28	-1.0
1,461,346	+		HMPREF1058_RS13510	0.28	-1.8
1,461,346	+		HMPREF1058_RS13510	0.28	-0.2
1,461,347	-		HMPREF1058_RS13510	0.28	-1.2