Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13385

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,510,705	+				-0.3
1,510,708	-				+0.4
1,510,877	+		HMPREF1058_RS13390	0.12	-0.6
1,510,944	+		HMPREF1058_RS13390	0.22	+0.6
1,510,996	+		HMPREF1058_RS13390	0.29	-0.3
1,511,022	-		HMPREF1058_RS13390	0.33	-1.5
1,511,023	+		HMPREF1058_RS13390	0.33	-0.8
1,511,024	-		HMPREF1058_RS13390	0.33	-0.4
1,511,080	+		HMPREF1058_RS13390	0.41	-1.9
1,511,222	+		HMPREF1058_RS13390	0.61	-1.6
1,511,291	+		HMPREF1058_RS13390	0.71	-3.3
1,511,309	+		HMPREF1058_RS13390	0.74	+0.9
1,511,349	+		HMPREF1058_RS13390	0.80	-0.2
1,511,375	-		HMPREF1058_RS13390	0.83	-2.1
1,511,392	+		HMPREF1058_RS13390	0.86	-0.4
1,511,393	-		HMPREF1058_RS13390	0.86	-1.2
1,511,472	+				-0.6
1,511,472	+				-0.7
1,511,477	+				+2.0
1,511,478	-				+0.7
1,511,493	+				-1.3
1,511,494	-				-0.3
1,511,517	-				-1.2
1,511,535	+				-1.1
1,511,639	+				-0.4
1,511,642	-				-0.6
1,511,652	-				-0.4
1,511,655	+				+0.7
1,511,656	-				-0.8
1,511,690	-				-0.6
1,511,698	-				-0.7
1,511,743	+				+0.8
1,511,743	+				+0.8
1,511,744	-				-0.7
1,511,744	-				-0.5
1,511,783	-				-2.6
1,511,814	-				-1.2
1,511,856	+				-0.0
1,511,856	+				-0.5
1,511,856	+				-1.1
1,511,858	+				-0.8
1,511,888	-		HMPREF1058_RS13385	0.10	-1.3
1,512,034	+		HMPREF1058_RS13385	0.19	-0.1
1,512,220	+		HMPREF1058_RS13385	0.29	-1.2
1,512,403	+		HMPREF1058_RS13385	0.39	-0.6
1,512,404	-		HMPREF1058_RS13385	0.39	+0.5
1,512,541	+		HMPREF1058_RS13385	0.47	-0.6
1,512,556	+		HMPREF1058_RS13385	0.48	-0.3
1,512,556	+		HMPREF1058_RS13385	0.48	-0.6
1,512,556	+		HMPREF1058_RS13385	0.48	-1.5
1,512,557	-		HMPREF1058_RS13385	0.48	-0.5
1,512,559	-		HMPREF1058_RS13385	0.48	-0.6
1,512,564	+		HMPREF1058_RS13385	0.48	+0.3
1,512,589	+		HMPREF1058_RS13385	0.50	+0.1
1,512,590	-		HMPREF1058_RS13385	0.50	-1.0
1,512,631	+		HMPREF1058_RS13385	0.52	+0.3
1,512,632	-		HMPREF1058_RS13385	0.52	+0.1
1,512,780	+		HMPREF1058_RS13385	0.60	+0.5
1,512,780	+		HMPREF1058_RS13385	0.60	-0.8
1,512,786	+		HMPREF1058_RS13385	0.61	+0.3
1,512,787	-		HMPREF1058_RS13385	0.61	-1.0
1,512,891	-		HMPREF1058_RS13385	0.67	-0.1
1,512,891	-		HMPREF1058_RS13385	0.67	+0.8
1,512,894	+		HMPREF1058_RS13385	0.67	-1.1
1,512,977	+		HMPREF1058_RS13385	0.71	+0.5
1,512,978	-		HMPREF1058_RS13385	0.71	-1.5
1,512,978	-		HMPREF1058_RS13385	0.71	-0.3
1,512,980	+		HMPREF1058_RS13385	0.72	-0.3
1,512,980	+		HMPREF1058_RS13385	0.72	-0.9
1,512,981	-		HMPREF1058_RS13385	0.72	-1.2
1,513,005	+		HMPREF1058_RS13385	0.73	+1.2
1,513,047	-		HMPREF1058_RS13385	0.75	-1.5
1,513,048	+		HMPREF1058_RS13385	0.75	+2.0
1,513,107	+		HMPREF1058_RS13385	0.79	-1.0
1,513,108	-		HMPREF1058_RS13385	0.79	-0.9
1,513,114	+		HMPREF1058_RS13385	0.79	+0.2
1,513,138	-		HMPREF1058_RS13385	0.80	-0.3
1,513,172	-		HMPREF1058_RS13385	0.82	+0.8
1,513,197	+		HMPREF1058_RS13385	0.84	-0.7
1,513,344	+				-0.1
1,513,345	-				-0.6
1,513,345	-				-0.6
1,513,345	-				-0.8
1,513,448	+				-0.3
1,513,479	+				+0.0
1,513,479	+				+0.2
1,513,479	+				+0.5
1,513,480	-				-0.6
1,513,488	+				-0.1
1,513,536	+				-0.7
1,513,560	+				-1.9
1,513,565	-				-2.3
1,513,578	+				-0.6
1,513,578	+				-0.6
1,513,579	-				-0.3
1,513,579	-				-0.2
1,513,623	+				-0.1
1,513,633	+				-0.4
1,513,654	+				+0.5
1,513,654	+				+0.1
1,513,655	-				+0.1
1,513,655	-				+0.8
1,513,656	+				+1.0
1,513,687	+				-1.5
1,513,693	-				-1.2
1,513,693	-				-1.0
1,513,800	+				+0.0
1,513,859	+				-0.6
1,513,987	+				-1.6
1,513,988	-				-1.3
1,513,991	+				-1.5
1,514,008	+				+0.2
1,514,009	-				-0.5
1,514,009	-				-1.1
1,514,010	+				-1.2
1,514,177	+		HMPREF1058_RS13380	0.15	-0.7
1,514,189	+		HMPREF1058_RS13380	0.15	+1.0
1,514,238	+		HMPREF1058_RS13380	0.17	-1.2
1,514,244	+		HMPREF1058_RS13380	0.17	-0.6
1,514,245	-		HMPREF1058_RS13380	0.17	-0.2
1,514,306	+		HMPREF1058_RS13380	0.19	-1.2
1,514,483	+		HMPREF1058_RS13380	0.26	-1.9