Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13200

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,558,040	-		HMPREF1058_RS0119515	0.39	+3.1
1,558,078	+		HMPREF1058_RS0119515	0.52	-1.6
1,558,154	+		HMPREF1058_RS0119515	0.78	+1.1
1,558,154	+		HMPREF1058_RS0119515	0.78	-0.2
1,558,155	-		HMPREF1058_RS0119515	0.79	-0.3
1,558,155	-		HMPREF1058_RS0119515	0.79	+0.0
1,558,157	-		HMPREF1058_RS0119515	0.79	+0.2
1,558,157	-		HMPREF1058_RS0119515	0.79	+0.3
1,558,157	-		HMPREF1058_RS0119515	0.79	-2.0
1,558,157	-		HMPREF1058_RS0119515	0.79	-0.4
1,558,159	-		HMPREF1058_RS0119515	0.80	-0.3
1,558,211	+				+0.5
1,558,211	+				-0.5
1,558,217	+				-0.6
1,558,217	+				+0.6
1,558,218	-				-0.7
1,558,218	-				-0.7
1,558,218	-				-0.5
1,558,220	-				+0.4
1,558,223	+				-0.1
1,558,319	+				+0.9
1,558,365	+				+0.5
1,558,378	+				+0.4
1,558,410	+				+0.0
1,558,483	-				+0.6
1,558,552	+				-0.9
1,558,552	+				-0.0
1,558,553	-				+1.0
1,558,690	-				-0.6
1,558,852	-				+0.4
1,558,920	+		HMPREF1058_RS20565	0.32	-0.7
1,559,027	+				+2.6
1,559,028	-				-0.5
1,559,095	-		HMPREF1058_RS13200	0.21	+0.1
1,559,147	+		HMPREF1058_RS13200	0.40	-3.0
1,559,220	-		HMPREF1058_RS13200	0.66	-1.2
1,559,221	+		HMPREF1058_RS13200	0.67	+1.2
1,559,232	-		HMPREF1058_RS13200	0.71	+0.8
1,559,259	-		HMPREF1058_RS13200	0.80	+2.2
1,559,289	-				-0.0
1,559,291	+				+1.0
1,559,306	+				+0.1
1,559,325	-				-1.4
1,559,325	-				+0.7
1,559,333	-				+0.4
1,559,344	+				+2.0
1,559,409	-				-1.6
1,559,428	+				+0.0
1,559,429	-				+0.8
1,559,440	+				+1.1
1,559,479	+				-0.5
1,559,483	+				-0.3
1,559,490	+				-0.2
1,559,564	+				+1.6
1,559,564	+				+1.0
1,559,564	+				-0.3
1,559,621	-				-2.2
1,559,630	-				-0.3
1,559,634	+				-0.3
1,559,646	+				-0.9
1,559,660	+				-0.1
1,559,692	-				-0.9
1,559,724	-				-0.3
1,559,724	-				+0.3
1,559,724	-				+0.4
1,559,730	+				-1.9
1,559,842	+				+1.5
1,559,842	+				-0.1
1,559,843	-				+2.0
1,559,843	-				-2.5
1,559,851	+				-0.9
1,559,852	-				+0.0
1,559,947	+				-0.3
1,559,965	+				-0.3
1,559,965	+				+0.2
1,559,965	+				-2.2
1,559,989	+				+0.6
1,560,050	-				+0.5
1,560,051	+				+1.6
1,560,051	+				+0.3
1,560,051	+				-0.4
1,560,052	-				-1.2
1,560,056	-		HMPREF1058_RS13195	0.10	+0.1
1,560,062	-		HMPREF1058_RS13195	0.11	-0.7
1,560,077	-		HMPREF1058_RS13195	0.11	-0.2
1,560,102	-		HMPREF1058_RS13195	0.13	-0.8
1,560,217	+		HMPREF1058_RS13195	0.20	-0.9
1,560,217	+		HMPREF1058_RS13195	0.20	-0.6
1,560,218	-		HMPREF1058_RS13195	0.20	-0.2
1,560,219	+		HMPREF1058_RS13195	0.20	+0.4
1,560,237	+		HMPREF1058_RS13195	0.21	-0.3
1,560,244	-		HMPREF1058_RS13195	0.22	+0.2
1,560,259	+		HMPREF1058_RS13195	0.23	+0.9
1,560,259	+		HMPREF1058_RS13195	0.23	-0.1
1,560,272	-		HMPREF1058_RS13195	0.24	+0.9