Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13140

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,582,457	+		HMPREF1058_RS13150	0.19	+1.3
1,582,458	-		HMPREF1058_RS13150	0.19	-0.5
1,582,592	+		HMPREF1058_RS13150	0.34	+1.5
1,582,594	+		HMPREF1058_RS13150	0.34	+0.1
1,582,594	+		HMPREF1058_RS13150	0.34	+0.3
1,582,607	+		HMPREF1058_RS13150	0.36	+0.4
1,582,607	+		HMPREF1058_RS13150	0.36	-1.0
1,582,607	+		HMPREF1058_RS13150	0.36	-0.1
1,582,608	-		HMPREF1058_RS13150	0.36	+0.4
1,582,608	-		HMPREF1058_RS13150	0.36	-0.0
1,582,622	+		HMPREF1058_RS13150	0.37	-0.6
1,582,623	-		HMPREF1058_RS13150	0.37	-0.4
1,582,663	+		HMPREF1058_RS13150	0.42	+0.1
1,582,758	+		HMPREF1058_RS13150	0.53	+0.1
1,582,759	-		HMPREF1058_RS13150	0.53	+1.2
1,582,759	-		HMPREF1058_RS13150	0.53	-0.6
1,582,759	-		HMPREF1058_RS13150	0.53	+0.4
1,582,760	+		HMPREF1058_RS13150	0.53	-0.8
1,582,760	+		HMPREF1058_RS13150	0.53	+1.4
1,582,761	-		HMPREF1058_RS13150	0.53	-0.2
1,582,761	-		HMPREF1058_RS13150	0.53	+1.2
1,582,761	-		HMPREF1058_RS13150	0.53	-0.0
1,582,761	-				+5.0
1,582,848	-		HMPREF1058_RS13150	0.63	+0.3
1,582,889	-		HMPREF1058_RS13150	0.68	+2.0
1,582,916	+		HMPREF1058_RS13150	0.71	+0.4
1,582,916	+		HMPREF1058_RS13150	0.71	+0.5
1,582,921	-		HMPREF1058_RS13150	0.71	-1.0
1,582,921	-		HMPREF1058_RS13150	0.71	-0.9
1,582,956	-		HMPREF1058_RS13150	0.75	+1.1
1,582,956	-		HMPREF1058_RS13150	0.75	+1.0
1,582,977	-		HMPREF1058_RS13150	0.78	+0.7
1,583,093	-				-0.3
1,583,142	+				-0.1
1,583,145	+				-0.2
1,583,145	+				-0.1
1,583,260	+				-0.1
1,583,272	-				-0.0
1,583,340	+				+1.3
1,583,341	-				-0.5
1,583,354	+				-0.8
1,583,356	+				+2.4
1,583,600	+		HMPREF1058_RS13140	0.24	-0.6
1,583,621	-		HMPREF1058_RS13140	0.28	-0.2
1,583,627	+		HMPREF1058_RS13140	0.29	+0.9
1,583,672	+		HMPREF1058_RS13140	0.36	-0.2
1,583,672	+		HMPREF1058_RS13140	0.36	+0.6
1,583,672	+		HMPREF1058_RS13140	0.36	+0.2
1,583,808	+		HMPREF1058_RS13140	0.57	-3.6
1,583,808	+		HMPREF1058_RS13140	0.57	-0.3
1,583,809	-		HMPREF1058_RS13140	0.58	+2.3
1,583,811	-		HMPREF1058_RS13140	0.58	+1.1
1,583,847	+		HMPREF1058_RS13140	0.64	-1.0
1,583,848	-		HMPREF1058_RS13140	0.64	+1.7
1,583,859	+		HMPREF1058_RS13140	0.66	+0.3
1,583,865	+		HMPREF1058_RS13140	0.67	+0.8
1,583,866	-		HMPREF1058_RS13140	0.67	-0.6
1,583,943	+		HMPREF1058_RS13140	0.79	+2.1
1,583,945	+		HMPREF1058_RS13140	0.79	-0.5
1,583,951	+		HMPREF1058_RS13140	0.80	+1.1
1,584,142	+				+1.4
1,584,143	-				+0.8
1,584,143	-				+1.5
1,584,144	+				-0.3
1,584,146	+				+2.8
1,584,149	+				-0.5
1,584,150	-				+1.3
1,584,150	-				+1.0
1,584,151	+				-1.0
1,584,173	-				+0.1
1,584,209	+				-1.1
1,584,242	+				+0.1
1,584,248	+				-0.3
1,584,260	+				+0.1
1,584,261	-				-0.0
1,584,261	-				+0.0
1,584,266	+				-1.7
1,584,352	+				+1.5
1,584,353	-				+0.8
1,584,358	+				-0.1
1,584,358	+				+0.2
1,584,359	-				-0.4
1,584,359	-				+1.0
1,584,361	+				+3.5
1,584,362	-				-1.2
1,584,363	+				+1.4
1,584,422	-				-0.9
1,584,425	+				-0.3
1,584,426	-				+0.4
1,584,458	+		HMPREF1058_RS13135	0.14	+0.4
1,584,458	+		HMPREF1058_RS13135	0.14	-0.2
1,584,459	-		HMPREF1058_RS13135	0.14	-1.0
1,584,459	-		HMPREF1058_RS13135	0.14	+2.6
1,584,506	+		HMPREF1058_RS13135	0.27	-0.2
1,584,506	+		HMPREF1058_RS13135	0.27	-0.5
1,584,507	-		HMPREF1058_RS13135	0.27	+0.0
1,584,507	-		HMPREF1058_RS13135	0.27	-0.2
1,584,509	+		HMPREF1058_RS13135	0.27	-0.8
1,584,529	+		HMPREF1058_RS13135	0.33	+0.6
1,584,577	+		HMPREF1058_RS13135	0.45	+1.7
1,584,578	-		HMPREF1058_RS13135	0.45	+3.8
1,584,594	+		HMPREF1058_RS13135	0.49	-1.6
1,584,680	+		HMPREF1058_RS13135	0.72	+0.4
1,584,690	-		HMPREF1058_RS13135	0.74	+0.6
1,584,764	-				-0.4
1,584,893	-				-2.3
1,584,893	-				-1.1
1,584,929	+				+0.6
1,584,947	-		HMPREF1058_RS13130	0.12	+0.6
1,584,947	-		HMPREF1058_RS13130	0.12	-1.4
1,584,947	-		HMPREF1058_RS13130	0.12	+1.4
1,584,947	-		HMPREF1058_RS13130	0.12	+0.5
1,584,947	-		HMPREF1058_RS13130	0.12	-0.0
1,584,950	+				+0.2
1,584,951	-		HMPREF1058_RS13130	0.12	+1.7
1,584,952	+		HMPREF1058_RS13130	0.12	-0.3
1,584,952	+		HMPREF1058_RS13130	0.12	-1.9
1,584,952	+		HMPREF1058_RS13130	0.12	-0.4
1,585,017	-		HMPREF1058_RS13130	0.21	-0.1
1,585,035	-		HMPREF1058_RS13130	0.24	+1.0
1,585,048	+		HMPREF1058_RS13130	0.25	-1.3