Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13060

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,602,525	+		HMPREF1058_RS13065	0.75	-0.5
1,602,569	+		HMPREF1058_RS13065	0.76	-0.3
1,602,569	+		HMPREF1058_RS13065	0.76	+0.5
1,602,584	-		HMPREF1058_RS13065	0.77	+1.1
1,602,586	+		HMPREF1058_RS13065	0.77	-1.1
1,602,586	+				+0.0
1,602,765	+		HMPREF1058_RS13065	0.82	+0.3
1,602,766	-		HMPREF1058_RS13065	0.82	+1.4
1,602,766	-		HMPREF1058_RS13065	0.82	-0.2
1,602,767	+		HMPREF1058_RS13065	0.82	+0.0
1,602,889	-		HMPREF1058_RS13065	0.86	+1.2
1,603,153	+				-0.1
1,603,237	+				+1.8
1,603,272	-				+0.7
1,603,371	-				+1.5
1,603,407	+				+1.3
1,603,407	+				+0.9
1,603,409	+				+0.4
1,603,444	-				-0.6
1,603,445	+				-0.6
1,603,445	+				-0.5
1,603,446	-				-0.3
1,603,447	-				+1.7
1,603,571	+		HMPREF1058_RS13060	0.33	-1.2
1,603,571	+		HMPREF1058_RS13060	0.33	-0.0
1,603,572	-		HMPREF1058_RS13060	0.33	+0.6
1,603,644	-		HMPREF1058_RS13060	0.48	+1.7
1,603,665	+		HMPREF1058_RS13060	0.53	-0.3
1,603,666	-		HMPREF1058_RS13060	0.53	+0.9
1,603,715	-		HMPREF1058_RS13060	0.63	-1.3
1,603,752	+		HMPREF1058_RS13060	0.71	-0.3
1,603,863	+				-0.1
1,603,876	+				-0.6
1,603,877	-				+0.3
1,603,881	-				+1.1
1,603,941	-				+1.1
1,603,941	-				+1.9
1,603,965	+				+0.8
1,603,966	-				-1.3
1,604,118	-				+1.6
1,604,173	+				-0.8
1,604,229	+				+0.6
1,604,302	-				-0.4
1,604,302	-				-0.9
1,604,302	-				+0.2
1,604,302	-				-0.8
1,604,303	+				+0.1
1,604,312	+				+2.5
1,604,374	+				-0.8
1,604,375	-				+0.1
1,604,379	-				-1.0
1,604,379	-				+0.3
1,604,379	-				+0.1
1,604,379	-				+0.4
1,604,408	+				-0.8
1,604,411	+				-0.8
1,604,411	+				-1.2
1,604,416	+				-0.5
1,604,416	+				-0.3
1,604,524	+				-0.9
1,604,525	-				+0.0
1,604,554	+				+0.4
1,604,555	-				+0.2
1,604,556	+				+0.2
1,604,557	-				+0.4
1,604,584	+				-0.6
1,604,638	+				-0.5
1,604,710	+		HMPREF1058_RS13055	0.19	+0.7
1,604,730	+		HMPREF1058_RS13055	0.22	+0.8
1,604,748	-		HMPREF1058_RS13055	0.24	-0.1
1,604,789	+		HMPREF1058_RS13055	0.30	+1.6
1,604,790	-		HMPREF1058_RS13055	0.30	-1.6
1,604,835	-		HMPREF1058_RS13055	0.37	-1.7