Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12815 and HMPREF1058_RS12810 are separated by 95 nucleotides HMPREF1058_RS12810 and HMPREF1058_RS12805 are separated by 80 nucleotides HMPREF1058_RS12805 and HMPREF1058_RS12800 are separated by 168 nucleotides
HMPREF1058_RS12815: HMPREF1058_RS12815 - sodium-dependent transporter, at 25,180 to 26,544
_RS12815
HMPREF1058_RS12810: HMPREF1058_RS12810 - VanZ family protein, at 26,640 to 27,026
_RS12810
HMPREF1058_RS12805: HMPREF1058_RS12805 - RNA polymerase sigma factor, at 27,107 to 27,610
_RS12805
HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253
_RS12800
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 25.832 kb on + strand, within HMPREF1058_RS12815 at 25.994 kb on - strand, within HMPREF1058_RS12815 at 25.999 kb on + strand, within HMPREF1058_RS12815 at 26.197 kb on + strand, within HMPREF1058_RS12815 at 26.198 kb on - strand, within HMPREF1058_RS12815 at 26.198 kb on - strand, within HMPREF1058_RS12815 at 26.199 kb on + strand, within HMPREF1058_RS12815 at 26.200 kb on - strand, within HMPREF1058_RS12815 at 26.200 kb on - strand, within HMPREF1058_RS12815 at 26.239 kb on + strand, within HMPREF1058_RS12815 at 26.240 kb on - strand, within HMPREF1058_RS12815 at 26.271 kb on - strand, within HMPREF1058_RS12815 at 26.325 kb on + strand, within HMPREF1058_RS12815 at 26.367 kb on + strand, within HMPREF1058_RS12815 at 26.407 kb on + strand, within HMPREF1058_RS12815 at 26.413 kb on - strand at 26.413 kb on - strand at 26.413 kb on - strand at 26.458 kb on + strand at 26.458 kb on + strand at 26.458 kb on + strand at 26.460 kb on + strand at 26.461 kb on - strand at 26.640 kb on - strand at 26.645 kb on - strand at 26.646 kb on + strand at 26.655 kb on - strand at 26.688 kb on - strand, within HMPREF1058_RS12810 at 26.745 kb on + strand, within HMPREF1058_RS12810 at 26.766 kb on - strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.767 kb on + strand, within HMPREF1058_RS12810 at 26.768 kb on - strand, within HMPREF1058_RS12810 at 26.768 kb on - strand, within HMPREF1058_RS12810 at 26.775 kb on + strand, within HMPREF1058_RS12810 at 26.804 kb on - strand, within HMPREF1058_RS12810 at 26.845 kb on + strand, within HMPREF1058_RS12810 at 26.846 kb on - strand, within HMPREF1058_RS12810 at 26.863 kb on + strand, within HMPREF1058_RS12810 at 26.864 kb on - strand, within HMPREF1058_RS12810 at 26.876 kb on + strand, within HMPREF1058_RS12810 at 26.877 kb on - strand, within HMPREF1058_RS12810 at 26.907 kb on + strand, within HMPREF1058_RS12810 at 26.981 kb on - strand, within HMPREF1058_RS12810 at 26.989 kb on - strand at 26.991 kb on + strand at 26.992 kb on - strand at 26.995 kb on + strand at 26.995 kb on + strand at 27.009 kb on - strand at 27.010 kb on + strand at 27.011 kb on - strand at 27.011 kb on - strand at 27.018 kb on - strand at 27.082 kb on + strand at 27.084 kb on + strand at 27.089 kb on + strand at 27.108 kb on + strand at 27.109 kb on - strand at 27.208 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.233 kb on - strand, within HMPREF1058_RS12805 at 27.282 kb on - strand, within HMPREF1058_RS12805 at 27.409 kb on + strand, within HMPREF1058_RS12805 at 27.410 kb on - strand, within HMPREF1058_RS12805 at 27.490 kb on + strand, within HMPREF1058_RS12805 at 27.574 kb on + strand at 27.578 kb on + strand at 27.579 kb on - strand at 27.582 kb on - strand at 27.592 kb on + strand at 27.613 kb on + strand at 27.614 kb on - strand at 27.614 kb on - strand at 27.714 kb on + strand at 27.715 kb on - strand at 27.727 kb on - strand at 27.901 kb on + strand at 27.987 kb on + strand at 28.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 25,832 + HMPREF1058_RS12815 0.48 +0.6 25,994 - HMPREF1058_RS12815 0.60 -0.2 25,999 + HMPREF1058_RS12815 0.60 +0.6 26,197 + HMPREF1058_RS12815 0.75 -1.7 26,198 - HMPREF1058_RS12815 0.75 -0.1 26,198 - HMPREF1058_RS12815 0.75 +0.7 26,199 + HMPREF1058_RS12815 0.75 -0.8 26,200 - HMPREF1058_RS12815 0.75 +0.5 26,200 - HMPREF1058_RS12815 0.75 -0.8 26,239 + HMPREF1058_RS12815 0.78 +0.8 26,240 - HMPREF1058_RS12815 0.78 +0.0 26,271 - HMPREF1058_RS12815 0.80 -2.0 26,325 + HMPREF1058_RS12815 0.84 -0.7 26,367 + HMPREF1058_RS12815 0.87 -0.0 26,407 + HMPREF1058_RS12815 0.90 +1.3 26,413 - -0.3 26,413 - -0.9 26,413 - -0.2 26,458 + +1.3 26,458 + -0.4 26,458 + -0.7 26,460 + -0.5 26,461 - -0.1 26,640 - -0.8 26,645 - -1.0 26,646 + -1.2 26,655 - +0.3 26,688 - HMPREF1058_RS12810 0.12 +0.7 26,745 + HMPREF1058_RS12810 0.27 +2.5 26,766 - HMPREF1058_RS12810 0.33 +0.9 26,767 + HMPREF1058_RS12810 0.33 +2.3 26,767 + HMPREF1058_RS12810 0.33 +0.5 26,767 + HMPREF1058_RS12810 0.33 +3.5 26,767 + HMPREF1058_RS12810 0.33 +0.6 26,767 + HMPREF1058_RS12810 0.33 +0.7 26,767 + HMPREF1058_RS12810 0.33 +0.0 26,767 + HMPREF1058_RS12810 0.33 +0.4 26,767 + HMPREF1058_RS12810 0.33 +0.8 26,768 - HMPREF1058_RS12810 0.33 -0.4 26,768 - HMPREF1058_RS12810 0.33 -1.4 26,775 + HMPREF1058_RS12810 0.35 +0.8 26,804 - HMPREF1058_RS12810 0.42 -0.6 26,845 + HMPREF1058_RS12810 0.53 +0.5 26,846 - HMPREF1058_RS12810 0.53 -1.2 26,863 + HMPREF1058_RS12810 0.58 +0.6 26,864 - HMPREF1058_RS12810 0.58 +0.6 26,876 + HMPREF1058_RS12810 0.61 +0.8 26,877 - HMPREF1058_RS12810 0.61 -0.9 26,907 + HMPREF1058_RS12810 0.69 +0.8 26,981 - HMPREF1058_RS12810 0.88 -0.7 26,989 - +0.8 26,991 + +1.7 26,992 - -0.8 26,995 + +0.4 26,995 + +0.9 27,009 - -0.8 27,010 + +0.0 27,011 - -0.5 27,011 - -0.3 27,018 - -0.3 27,082 + +1.4 27,084 + -0.8 27,089 + -0.1 27,108 + -1.5 27,109 - +1.9 27,208 + HMPREF1058_RS12805 0.20 -1.2 27,224 + HMPREF1058_RS12805 0.23 -1.1 27,224 + HMPREF1058_RS12805 0.23 -1.6 27,228 + HMPREF1058_RS12805 0.24 +0.8 27,228 + HMPREF1058_RS12805 0.24 +0.8 27,228 + HMPREF1058_RS12805 0.24 -2.8 27,228 + HMPREF1058_RS12805 0.24 -1.1 27,228 + HMPREF1058_RS12805 0.24 +2.2 27,228 + HMPREF1058_RS12805 0.24 -0.1 27,228 + HMPREF1058_RS12805 0.24 +0.8 27,229 - HMPREF1058_RS12805 0.24 -1.3 27,229 - HMPREF1058_RS12805 0.24 +1.1 27,229 - HMPREF1058_RS12805 0.24 +0.3 27,232 + HMPREF1058_RS12805 0.25 +0.1 27,232 + HMPREF1058_RS12805 0.25 -0.1 27,233 - HMPREF1058_RS12805 0.25 +1.7 27,282 - HMPREF1058_RS12805 0.35 +1.5 27,409 + HMPREF1058_RS12805 0.60 -2.3 27,410 - HMPREF1058_RS12805 0.60 +3.2 27,490 + HMPREF1058_RS12805 0.76 +1.8 27,574 + -0.4 27,578 + -2.1 27,579 - +3.3 27,582 - -0.5 27,592 + -1.1 27,613 + -0.4 27,614 - +2.0 27,614 - +1.5 27,714 + +1.5 27,715 - +6.5 27,727 - +2.0 27,901 + +0.0 27,987 + +0.7 28,022 - +0.9
Or see this region's nucleotide sequence