Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12205 and HMPREF1058_RS12200 are separated by 7 nucleotides HMPREF1058_RS12200 and HMPREF1058_RS12195 are separated by 138 nucleotides
HMPREF1058_RS12205: HMPREF1058_RS12205 - Fe-S cluster assembly protein SufB, at 176,720 to 178,171
_RS12205
HMPREF1058_RS12200: HMPREF1058_RS12200 - CvpA family protein, at 178,179 to 178,682
_RS12200
HMPREF1058_RS12195: HMPREF1058_RS12195 - translation initiation factor IF-2, at 178,821 to 181,832
_RS12195
Position (kb) 178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.183 kb on - strand at 178.309 kb on - strand, within HMPREF1058_RS12200 at 178.310 kb on + strand, within HMPREF1058_RS12200 at 178.311 kb on - strand, within HMPREF1058_RS12200 at 178.311 kb on - strand, within HMPREF1058_RS12200 at 178.312 kb on + strand, within HMPREF1058_RS12200 at 178.349 kb on + strand, within HMPREF1058_RS12200 at 178.349 kb on + strand, within HMPREF1058_RS12200 at 178.350 kb on - strand, within HMPREF1058_RS12200 at 178.351 kb on + strand at 178.351 kb on + strand, within HMPREF1058_RS12200 at 178.452 kb on + strand, within HMPREF1058_RS12200 at 178.458 kb on + strand, within HMPREF1058_RS12200 at 178.459 kb on - strand, within HMPREF1058_RS12200 at 178.459 kb on - strand, within HMPREF1058_RS12200 at 178.459 kb on - strand, within HMPREF1058_RS12200 at 178.464 kb on + strand, within HMPREF1058_RS12200 at 178.476 kb on + strand, within HMPREF1058_RS12200 at 178.515 kb on + strand, within HMPREF1058_RS12200 at 178.516 kb on - strand, within HMPREF1058_RS12200 at 178.516 kb on - strand, within HMPREF1058_RS12200 at 178.621 kb on - strand, within HMPREF1058_RS12200 at 178.661 kb on + strand at 178.661 kb on + strand at 178.661 kb on + strand at 178.662 kb on - strand at 178.662 kb on - strand at 178.667 kb on + strand at 178.668 kb on - strand at 178.671 kb on + strand at 178.695 kb on + strand at 178.793 kb on - strand at 178.799 kb on + strand at 178.800 kb on - strand at 178.800 kb on - strand at 178.800 kb on - strand at 178.820 kb on - strand at 178.823 kb on - strand at 178.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 178,183 - +0.2 178,309 - HMPREF1058_RS12200 0.26 +1.1 178,310 + HMPREF1058_RS12200 0.26 +0.3 178,311 - HMPREF1058_RS12200 0.26 +1.4 178,311 - HMPREF1058_RS12200 0.26 +0.3 178,312 + HMPREF1058_RS12200 0.26 +1.5 178,349 + HMPREF1058_RS12200 0.34 +0.2 178,349 + HMPREF1058_RS12200 0.34 +0.3 178,350 - HMPREF1058_RS12200 0.34 +1.0 178,351 + +1.2 178,351 + HMPREF1058_RS12200 0.34 -1.5 178,452 + HMPREF1058_RS12200 0.54 -0.1 178,458 + HMPREF1058_RS12200 0.55 +0.1 178,459 - HMPREF1058_RS12200 0.56 +1.8 178,459 - HMPREF1058_RS12200 0.56 +1.9 178,459 - HMPREF1058_RS12200 0.56 +1.0 178,464 + HMPREF1058_RS12200 0.57 +0.2 178,476 + HMPREF1058_RS12200 0.59 -0.1 178,515 + HMPREF1058_RS12200 0.67 -0.3 178,516 - HMPREF1058_RS12200 0.67 +0.2 178,516 - HMPREF1058_RS12200 0.67 +0.6 178,621 - HMPREF1058_RS12200 0.88 +1.9 178,661 + -0.1 178,661 + +1.8 178,661 + +0.2 178,662 - +1.3 178,662 - +2.0 178,667 + -1.2 178,668 - +1.0 178,671 + -0.3 178,695 + -2.1 178,793 - -0.5 178,799 + +1.8 178,800 - -0.5 178,800 - +0.3 178,800 - +1.8 178,820 - +0.4 178,823 - -0.2 178,823 - +1.1
Or see this region's nucleotide sequence