Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12040 and HMPREF1058_RS12035 are separated by 98 nucleotides HMPREF1058_RS12035 and HMPREF1058_RS12030 are separated by 82 nucleotides
HMPREF1058_RS12040: HMPREF1058_RS12040 - butyrate kinase, at 220,074 to 221,138
_RS12040
HMPREF1058_RS12035: HMPREF1058_RS12035 - phosphate butyryltransferase, at 221,237 to 222,145
_RS12035
HMPREF1058_RS12030: HMPREF1058_RS12030 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 222,228 to 223,985
_RS12030
Position (kb) 221
222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 220.282 kb on + strand at 220.283 kb on - strand, within HMPREF1058_RS12040 at 220.283 kb on - strand, within HMPREF1058_RS12040 at 220.312 kb on + strand, within HMPREF1058_RS12040 at 220.339 kb on + strand, within HMPREF1058_RS12040 at 220.451 kb on + strand, within HMPREF1058_RS12040 at 220.451 kb on + strand, within HMPREF1058_RS12040 at 220.452 kb on - strand, within HMPREF1058_RS12040 at 220.452 kb on - strand, within HMPREF1058_RS12040 at 220.454 kb on - strand, within HMPREF1058_RS12040 at 220.458 kb on - strand, within HMPREF1058_RS12040 at 220.654 kb on + strand, within HMPREF1058_RS12040 at 220.654 kb on + strand, within HMPREF1058_RS12040 at 220.654 kb on + strand, within HMPREF1058_RS12040 at 220.888 kb on + strand, within HMPREF1058_RS12040 at 221.003 kb on + strand, within HMPREF1058_RS12040 at 221.234 kb on + strand at 221.335 kb on + strand, within HMPREF1058_RS12035 at 221.336 kb on - strand, within HMPREF1058_RS12035 at 221.336 kb on - strand at 221.383 kb on + strand, within HMPREF1058_RS12035 at 221.508 kb on + strand, within HMPREF1058_RS12035 at 221.509 kb on - strand, within HMPREF1058_RS12035 at 221.567 kb on - strand, within HMPREF1058_RS12035 at 221.840 kb on - strand, within HMPREF1058_RS12035 at 222.134 kb on + strand at 222.135 kb on - strand at 222.136 kb on + strand at 222.136 kb on + strand at 222.137 kb on - strand at 222.153 kb on - strand at 222.176 kb on + strand at 222.274 kb on + strand at 222.275 kb on - strand at 222.347 kb on + strand at 222.404 kb on + strand, within HMPREF1058_RS12030 at 222.466 kb on + strand, within HMPREF1058_RS12030 at 222.527 kb on - strand, within HMPREF1058_RS12030 at 222.535 kb on + strand, within HMPREF1058_RS12030 at 222.535 kb on + strand, within HMPREF1058_RS12030 at 222.536 kb on - strand, within HMPREF1058_RS12030 at 222.622 kb on + strand at 222.622 kb on + strand, within HMPREF1058_RS12030 at 222.673 kb on + strand, within HMPREF1058_RS12030 at 222.673 kb on + strand, within HMPREF1058_RS12030 at 222.674 kb on - strand, within HMPREF1058_RS12030 at 222.734 kb on + strand, within HMPREF1058_RS12030 at 222.767 kb on + strand, within HMPREF1058_RS12030 at 222.953 kb on + strand, within HMPREF1058_RS12030 at 222.960 kb on - strand, within HMPREF1058_RS12030 at 222.983 kb on + strand, within HMPREF1058_RS12030 at 222.984 kb on - strand, within HMPREF1058_RS12030 at 222.985 kb on + strand, within HMPREF1058_RS12030 at 223.128 kb on - strand, within HMPREF1058_RS12030 at 223.128 kb on - strand, within HMPREF1058_RS12030
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 220,282 + -0.5 220,283 - HMPREF1058_RS12040 0.20 -0.8 220,283 - HMPREF1058_RS12040 0.20 -2.1 220,312 + HMPREF1058_RS12040 0.22 -1.8 220,339 + HMPREF1058_RS12040 0.25 -0.5 220,451 + HMPREF1058_RS12040 0.35 -1.2 220,451 + HMPREF1058_RS12040 0.35 -3.3 220,452 - HMPREF1058_RS12040 0.35 +0.5 220,452 - HMPREF1058_RS12040 0.35 -0.9 220,454 - HMPREF1058_RS12040 0.36 -1.7 220,458 - HMPREF1058_RS12040 0.36 -0.9 220,654 + HMPREF1058_RS12040 0.54 -0.6 220,654 + HMPREF1058_RS12040 0.54 -1.1 220,654 + HMPREF1058_RS12040 0.54 -0.8 220,888 + HMPREF1058_RS12040 0.76 -0.2 221,003 + HMPREF1058_RS12040 0.87 -0.9 221,234 + +0.6 221,335 + HMPREF1058_RS12035 0.11 +0.9 221,336 - HMPREF1058_RS12035 0.11 +0.7 221,336 - +1.8 221,383 + HMPREF1058_RS12035 0.16 -0.3 221,508 + HMPREF1058_RS12035 0.30 +0.8 221,509 - HMPREF1058_RS12035 0.30 +0.8 221,567 - HMPREF1058_RS12035 0.36 -1.2 221,840 - HMPREF1058_RS12035 0.66 +0.5 222,134 + +0.1 222,135 - -0.0 222,136 + -0.6 222,136 + +0.2 222,137 - -1.7 222,153 - +1.2 222,176 + +0.0 222,274 + -1.1 222,275 - -3.8 222,347 + -0.2 222,404 + HMPREF1058_RS12030 0.10 +1.2 222,466 + HMPREF1058_RS12030 0.14 -1.3 222,527 - HMPREF1058_RS12030 0.17 -0.6 222,535 + HMPREF1058_RS12030 0.17 -1.2 222,535 + HMPREF1058_RS12030 0.17 +0.0 222,536 - HMPREF1058_RS12030 0.18 -0.5 222,622 + -1.5 222,622 + HMPREF1058_RS12030 0.22 -0.7 222,673 + HMPREF1058_RS12030 0.25 -1.4 222,673 + HMPREF1058_RS12030 0.25 -0.9 222,674 - HMPREF1058_RS12030 0.25 -0.0 222,734 + HMPREF1058_RS12030 0.29 -1.2 222,767 + HMPREF1058_RS12030 0.31 -1.5 222,953 + HMPREF1058_RS12030 0.41 +0.6 222,960 - HMPREF1058_RS12030 0.42 +0.4 222,983 + HMPREF1058_RS12030 0.43 -0.3 222,984 - HMPREF1058_RS12030 0.43 -0.8 222,985 + HMPREF1058_RS12030 0.43 -0.9 223,128 - HMPREF1058_RS12030 0.51 +0.8 223,128 - HMPREF1058_RS12030 0.51 -0.7
Or see this region's nucleotide sequence